View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2962_high_1 (Length: 648)

Name: NF2962_high_1
Description: NF2962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2962_high_1
NF2962_high_1
[»] chr8 (9 HSPs)
chr8 (15-624)||(35405466-35406087)
chr8 (120-356)||(16421040-16421273)
chr8 (134-359)||(2872081-2872303)
chr8 (120-344)||(7452229-7452450)
chr8 (120-344)||(19384752-19384973)
chr8 (120-246)||(412502-412629)
chr8 (18-88)||(16421315-16421385)
chr8 (33-80)||(2871969-2872016)
chr8 (33-88)||(7452131-7452186)
[»] chr7 (15 HSPs)
chr7 (120-362)||(45235827-45236066)
chr7 (15-360)||(45942612-45942965)
chr7 (124-351)||(13439934-13440158)
chr7 (154-355)||(3104816-3105013)
chr7 (120-344)||(15653747-15653968)
chr7 (154-344)||(12378767-12378953)
chr7 (120-344)||(46623581-46623803)
chr7 (15-80)||(30385961-30386025)
chr7 (15-88)||(45235711-45235784)
chr7 (33-80)||(28327135-28327182)
chr7 (33-88)||(46623483-46623538)
chr7 (36-88)||(3104685-3104737)
chr7 (36-80)||(13439835-13439879)
chr7 (33-88)||(15654011-15654066)
chr7 (267-349)||(43105332-43105414)
[»] chr5 (5 HSPs)
chr5 (19-360)||(32918082-32918432)
chr5 (15-367)||(6264217-6264577)
chr5 (15-321)||(15499711-15500025)
chr5 (15-362)||(34480717-34481072)
chr5 (121-343)||(10486963-10487182)
[»] chr6 (12 HSPs)
chr6 (36-359)||(25317636-25317967)
chr6 (36-359)||(26205130-26205461)
chr6 (19-359)||(15673590-15673938)
chr6 (121-359)||(23347493-23347728)
chr6 (15-367)||(8872845-8873205)
chr6 (120-344)||(33629974-33630195)
chr6 (120-344)||(1682917-1683138)
chr6 (15-80)||(13755226-13755291)
chr6 (120-194)||(19349144-19349219)
chr6 (36-85)||(19349047-19349096)
chr6 (36-88)||(23347772-23347824)
chr6 (120-211)||(19256922-19257013)
[»] chr2 (12 HSPs)
chr2 (15-367)||(22052388-22052748)
chr2 (33-359)||(13549903-13550237)
chr2 (134-359)||(43627390-43627612)
chr2 (135-359)||(31085664-31085885)
chr2 (124-351)||(33547753-33547977)
chr2 (15-362)||(9949288-9949643)
chr2 (159-354)||(26179959-26180149)
chr2 (186-348)||(45421463-45421621)
chr2 (33-80)||(43627278-43627325)
chr2 (36-88)||(31085943-31085995)
chr2 (36-80)||(33547654-33547698)
chr2 (33-78)||(45421297-45421342)
[»] chr3 (15 HSPs)
chr3 (121-359)||(2813527-2813762)
chr3 (36-359)||(6176505-6176836)
chr3 (15-359)||(29309169-29309521)
chr3 (124-359)||(23601654-23601886)
chr3 (134-317)||(7146932-7147112)
chr3 (15-362)||(25873134-25873491)
chr3 (169-359)||(14904193-14904379)
chr3 (120-354)||(9378974-9379205)
chr3 (120-343)||(49731975-49732196)
chr3 (33-348)||(30167383-30167706)
chr3 (19-88)||(2813806-2813875)
chr3 (36-80)||(23601555-23601599)
chr3 (13-85)||(28675238-28675310)
chr3 (33-80)||(7146820-7146867)
chr3 (162-213)||(28675097-28675148)
[»] chr1 (16 HSPs)
chr1 (15-352)||(14119526-14119877)
chr1 (120-356)||(3692504-3692737)
chr1 (124-359)||(32353324-32353556)
chr1 (15-362)||(37530325-37530682)
chr1 (124-351)||(48073466-48073690)
chr1 (154-344)||(36305696-36305882)
chr1 (120-344)||(36929044-36929265)
chr1 (120-344)||(48265760-48265981)
chr1 (120-344)||(21528038-21528259)
chr1 (19-77)||(38231452-38231510)
chr1 (19-80)||(3692392-3692453)
chr1 (33-78)||(36305563-36305608)
chr1 (33-78)||(36928946-36928991)
chr1 (36-80)||(32353611-32353655)
chr1 (33-88)||(21527940-21527995)
chr1 (36-88)||(48073738-48073790)
[»] chr4 (15 HSPs)
chr4 (120-359)||(8487008-8487244)
chr4 (120-359)||(20674899-20675135)
chr4 (120-356)||(2631275-2631508)
chr4 (124-351)||(23873511-23873735)
chr4 (124-351)||(55298501-55298725)
chr4 (120-344)||(3130021-3130242)
chr4 (120-348)||(7663277-7663501)
chr4 (120-343)||(8655116-8655336)
chr4 (120-344)||(47540802-47541023)
chr4 (36-78)||(8487297-8487339)
chr4 (19-80)||(2631163-2631224)
chr4 (120-202)||(23279484-23279567)
chr4 (19-77)||(20673474-20673532)
chr4 (33-78)||(7663554-7663599)
chr4 (36-88)||(23873782-23873834)
[»] scaffold0418 (2 HSPs)
scaffold0418 (120-348)||(7552-7777)
scaffold0418 (33-78)||(7454-7499)
[»] scaffold0029 (1 HSPs)
scaffold0029 (120-211)||(134807-134899)
[»] scaffold0002 (2 HSPs)
scaffold0002 (120-211)||(312634-312726)
scaffold0002 (120-211)||(328088-328180)


Alignment Details
Target: chr8 (Bit Score: 463; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 15 - 624
Target Start/End: Original strand, 35405466 - 35406087
Alignment:
Q  15 cagacacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactgnnnnnnnntgatcggaaatattatct 114  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||        ||||||||||||||||||    
T  35405466 cagacacatagaaaccatataagttgcataaaagaacgtctagcaacaccaccacctgtcaaatgagtaaactgaaaaaaa-tgatcggaaatattatct 35405564  T
Q  115 gcgtc------------accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgac 201  Q
    |||||            |||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  35405565 gcgtccaccccatagcaaccaatccaatcctgcaccaaatgccacagagaaccaaaaatattacacaataaaaagagatgttgtgccgtttcaggatgac 35405664  T
Q  202 cacaaccagcaattaacacacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacg 301  Q
    ||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  35405665 cacaaccagcaa----cacacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgagcctccacg 35405760  T
Q  302 cgaaaacggaaaccttcaagagaacctttttgtgccacaccaaatccagagcatagtctacaacctccctaattaattactttgatgtatgagctttgtt 401  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  35405761 cgaaaacgaaaaccttcaagagaacctgtttgtgccacaccaaatccagagcatagtctacaacctccttaattaattactttgatgtatgagctttgtt 35405860  T
Q  402 caatgaatttgaatattttgatctccttcacattttgtccaattttattatttcctaagttgaatttaaaatttatgcaaatacatgagttttcgatttg 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35405861 caatgaatttgaatattttgatctccttcacattttgtccaattttattatttcctaagttgaatttaaaatttatgcaaatacatgagttttcgatttg 35405960  T
Q  502 gttatacaccaactctttcgaggttttattagatttgatgttgaagttttagccgattaatga----ttaggaatatttttatctcaaggcaaggtaatt 597  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    ||||||||||| |||||||||||||||||||||    
T  35405961 gttatacaccaactctttcgaggttttattagatttgatgttgaagttttaaccgattaatgatcatttaggaatattgttatctcaaggcaaggtaatt 35406060  T
Q  598 gtgaacgaacaataactcttgaaggaa 624  Q
    |||||||||||||||||||| ||||||    
T  35406061 gtgaacgaacaataactctttaaggaa 35406087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 120 - 356
Target Start/End: Complemental strand, 16421273 - 16421040
Alignment:
Q  120 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 218  Q
    |||||||||| || ||||||||||||||||||||| |||||||| |||||| ||||| ||| || |||||| ||||||||||||||| |||||||    |    
T  16421273 accaatccaagctcgcaccaaatgccacagagaaccaaaagtatcacacaacaaaaatagacgtcgtgccgattcaggatgaccacagccagcaa----c 16421178  T
Q  219 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaaccttc 318  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| || || |||||| |||||||||||||||    
T  16421177 acacgaggacatgtccggcgacaacacccgtctagcaatcaaatttgtccttgttggtaaacgatcacggaggagccgccacgcaaaaacggaaaccttc 16421078  T
Q  319 aagagaacctttttgtgccacaccaaatccagagcata 356  Q
    ||| |||||| ||||||||||||||||| |||||||||    
T  16421077 aagggaacctgtttgtgccacaccaaattcagagcata 16421040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 134 - 359
Target Start/End: Original strand, 2872081 - 2872303
Alignment:
Q  134 gcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaacacacgaggacatgt 232  Q
    ||||||||||||||||||||| |||||||| |||||||||||| |||||| | |||| |||||||||||||||| ||||||    ||||||| ||||| |    
T  2872081 gcaccaaatgccacagagaaccaaaagtatcacacaataaaaatagatgtcgagccgattcaggatgaccacaatcagcaa----cacacgaagacatat 2872176  T
Q  233 cgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaaccttcaagagaaccttttt 332  Q
    | ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||| ||| |||||| |||    
T  2872177 caggcgacaacacccgtctagcaatcaaatttgtccttgttggtaaacgatcacggatgagcctccacgcaaaaacggaaacctttaagggaacctgttt 2872276  T
Q  333 gtgccacaccaaatccagagcatagtc 359  Q
    ||||||||||||||||| | |||||||    
T  2872277 gtgccacaccaaatccaaatcatagtc 2872303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 120 - 344
Target Start/End: Original strand, 7452229 - 7452450
Alignment:
Q  120 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 218  Q
    ||||||||||||  |||||| |||||| || |||| |||||| |||||||| | |||||||||||| ||||||||||||||||| ||||||||     ||    
T  7452229 accaatccaatcacgcaccatatgccaaagcgaaccaaaagtgttacacaacagaaagagatgttgagccgtttcaggatgaccgcaaccagc----gac 7452324  T
Q  219 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaaccttc 318  Q
    |||  ||||||| || ||| ||||||||||||  ||||||||||| ||||| |||||||| |||||   || ||  ||||| || ||||| |||||||||    
T  7452325 acataaggacatatcaggcaacaacacccgtcgagcaatcaaattagtcttcgttggtaaccgatccttgaggagtctccatgcaaaaactgaaaccttc 7452424  T
Q  319 aagagaacctttttgtgccacaccaa 344  Q
    ||| |||||| ||||||||| |||||    
T  7452425 aagggaacctgtttgtgccaaaccaa 7452450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 120 - 344
Target Start/End: Complemental strand, 19384973 - 19384752
Alignment:
Q  120 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 218  Q
    ||||||||||||  |||||| |||||| || |||| ||||||||||||||| || || |||||||| |||||||| |||||||| |||||||| |    |    
T  19384973 accaatccaatcacgcaccatatgccaaagcgaaccaaaagtattacacaacaagaatagatgttgggccgtttccggatgaccgcaaccagcga----c 19384878  T
Q  219 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaaccttc 318  Q
    |||  ||||||||||   ||| ||||||||||  ||||||||||| ||||| || ||||||||||| |||| ||  ||||| || ||||| || | ||||    
T  19384877 acataaggacatgtcattcgataacacccgtcgagcaatcaaattagtcttcgtcggtaaacgatctcggaagagtctccatgcaaaaactgagatcttc 19384778  T
Q  319 aagagaacctttttgtgccacaccaa 344  Q
    ||| |||||| |||||||||||||||    
T  19384777 aagggaacctgtttgtgccacaccaa 19384752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 120 - 246
Target Start/End: Complemental strand, 412629 - 412502
Alignment:
Q  120 accaatccaatcttgcaccaaatgccacagagaacaaaa-----gtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaat 214  Q
    ||||||||||||| ||||||||||||||||||| | |||     |||| |||||||||| |||||||||| |||| |||||||||||||||||||||       
T  412629 accaatccaatctcgcaccaaatgccacagagagccaaaattaagtatcacacaataaatagagatgttgagccgattcaggatgaccacaaccagc--- 412533  T
Q  215 taacacacgaggacatgtcgggcgacaacacc 246  Q
     ||||||||||||||| || | ||||||||||    
T  412532 -aacacacgaggacatatcagacgacaacacc 412502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 16421385 - 16421315
Alignment:
Q  18 acacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactg 88  Q
    ||||||||||  || || |||||||||||||||||||||||| ||||| |||||||||||||| | |||||    
T  16421385 acacatagaagccatattagttgcataaaagaacgtctagcagcaccaccacctgtcaaatgagtgaactg 16421315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 2871969 - 2872016
Alignment:
Q  33 ataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatga 80  Q
    |||||||||||||||||||||| |||||||||| ||||| ||||||||    
T  2871969 ataagttgcataaaagaacgtccagcaacaccaccacctatcaaatga 2872016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 7452131 - 7452186
Alignment:
Q  33 ataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactg 88  Q
    ||||||||||||||||||||||||| |||| || |||||||||||| | |||||||    
T  7452131 ataagttgcataaaagaacgtctagaaacagcaccacctgtcaaataagtaaactg 7452186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 167; Significance: 4e-89; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 120 - 362
Target Start/End: Original strand, 45235827 - 45236066
Alignment:
Q  120 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 218  Q
    ||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||    |    
T  45235827 accaatccaatctcgcaccaaatgtcacagagaaccaaaagtattacacaataaaaagagatgttgtactgtttcaggatgaccacaaccaacaa----c 45235922  T
Q  219 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaaccttc 318  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  45235923 acacgaggacatgtcaggcgacatcacccgtcttgcaatcaaatttatctttgttggtaaacgatcacggatgagcctccacgcgaaaacggaaaccttc 45236022  T
Q  319 aagagaacctttttgtgccacaccaaatccagagcatagtctac 362  Q
    ||| |||||| |||||| ||||||||||||| ||||||||||||    
T  45236023 aagggaacctgtttgtgtcacaccaaatccaaagcatagtctac 45236066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 15 - 360
Target Start/End: Original strand, 45942612 - 45942965
Alignment:
Q  15 cagacacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactgnnnnnnnntgatcggaaatattatct 114  Q
    |||||||| ||||  || || ||||||||||||||| || ||||||||||| |||||||||||||| |||||||        |||||||||||||||| |    
T  45942612 cagacacaaagaagccaaattagttgcataaaagaatgtgtagcaacaccaccacctgtcaaatgagtaaactgtaaaaaa-tgatcggaaatattattt 45942710  T
Q  115 gcgtc------------accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgac 201  Q
    | |||            ||||||| ||||| |||||| ||| |||||||| | |||||||||||||||||||||||||||||| ||||  ||||||||||    
T  45942711 gtgtccaccccatagcaaccaatcaaatctcgcaccagatggcacagagagccaaaagtattacacaataaaaagagatgttgcgccgactcaggatgac 45942810  T
Q  202 cacaaccagcaattaacacacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacg 301  Q
    |||||||| |||    |||||||||| ||||| ||||||||||||||| | ||||||||||| ||| |||||||||||||||| | ||||| ||||||||    
T  45942811 cacaaccaacaa----cacacgaggatatgtcaggcgacaacacccgtttagcaatcaaattagtccttgttggtaaacgatctcagatgagcctccacg 45942906  T
Q  302 cgaaaacggaaaccttcaagagaacctttttgtgccacaccaaatccagagcatagtct 360  Q
    |||||||||| ||||||||| |||||| ||||||||||||||||| |||||||||||||    
T  45942907 cgaaaacggacaccttcaagggaacctgtttgtgccacaccaaattcagagcatagtct 45942965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 124 - 351
Target Start/End: Original strand, 13439934 - 13440158
Alignment:
Q  124 atccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaacacac 222  Q
    ||||||||  ||||||||||||||||||||| |||||||| |||||||||||| |||||| | |||| |||||||||||| || |||||||    |||||    
T  13439934 atccaatcacgcaccaaatgccacagagaaccaaaagtatcacacaataaaaatagatgtcgagccgattcaggatgaccgcagccagcaa----cacac 13440029  T
Q  223 gaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaaccttcaaga 322  Q
    || |||||||| | ||||||||||||||  ||||||||||||||| ||||||||||||||||||||| || ||||||||| ||||||||||||||||||     
T  13440030 gaagacatgtcagacgacaacacccgtcgagcaatcaaatttgtccttgttggtaaacgatcacggaggagcctccacgcaaaaacggaaaccttcaagg 13440129  T
Q  323 gaacctttttgtgccacaccaaatccaga 351  Q
    |||||| ||||||||||||||||||||||    
T  13440130 gaacctgtttgtgccacaccaaatccaga 13440158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 154 - 355
Target Start/End: Original strand, 3104816 - 3105013
Alignment:
Q  154 caaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaacacacgaggacatgtcgggcgacaacacccgtcttg 253  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||| || || ||| |    ||||||| |||||||||| | || || ||||||||| |    
T  3104816 caaaagtattacacaataaaaagaggtgttgtcccgtttcaggatgtccgcagccaac----aacacacaaggacatgtcagccgccagcacccgtctag 3104911  T
Q  254 caatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaaccttcaagagaacctttttgtgccacaccaaatccagagc 353  Q
    | ||||||||||||||||||||||||||||||||||||| | ||||| | ||||| ||||||||||||  |||||  ||||||||||||||||||| |||    
T  3104912 ctatcaaatttgtctttgttggtaaacgatcacggatgagcatccacacaaaaactgaaaccttcaaggaaacctgattgtgccacaccaaatccaaagc 3105011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 120 - 344
Target Start/End: Complemental strand, 15653968 - 15653747
Alignment:
Q  120 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 218  Q
    ||||||||||||  |||||| |||||| || |||| |||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||| |    |    
T  15653968 accaatccaatcacgcaccatatgccaaagcgaaccaaaagtgttacacaacaaaaagagatgttgagccgtttcaggatgaccgcaaccagcga----c 15653873  T
Q  219 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaaccttc 318  Q
    |||  ||||||| || | || |||||||||||  |||||||| || |||||||||||||||||||| |||| ||  |||||||| ||||| || ||||||    
T  15653872 acataaggacatatcagtcggcaacacccgtcgagcaatcaagttagtctttgttggtaaacgatcccggaggagtctccacgcaaaaactgataccttc 15653773  T
Q  319 aagagaacctttttgtgccacaccaa 344  Q
    ||| |||||| |||||||||||||||    
T  15653772 aagggaacctgtttgtgccacaccaa 15653747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 154 - 344
Target Start/End: Complemental strand, 12378953 - 12378767
Alignment:
Q  154 caaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaacacacgaggacatgtcgggcgacaacacccgtcttg 253  Q
    ||||||| ||||||||||||||||| ||||| |||||||||| ||| | ||| |||||||    ||||||| |||||||| | || ||||||| |||| |    
T  12378953 caaaagtgttacacaataaaaagaggtgttgcgccgtttcagaatgtctacagccagcaa----cacacgatgacatgtcagtcgtcaacacctgtctag 12378858  T
Q  254 caatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaaccttcaagagaacctttttgtgccacaccaa 344  Q
    |||||| |||| ||||||||||||| |||||||||||||  |||||| | ||||| || ||||||||| ||||||  ||||||||||||||    
T  12378857 caatcagatttatctttgttggtaaccgatcacggatgagtctccacacaaaaactgataccttcaagggaacctggttgtgccacaccaa 12378767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 120 - 344
Target Start/End: Original strand, 46623581 - 46623803
Alignment:
Q  120 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaaga-gatgttgtgccgtttcaggatgaccacaaccagcaattaa 217  Q
    ||||||||||||  |||||| |||||| || |||| |||||| ||||| || ||||| | ||||||| |||| |||||||||||| |||||||| |        
T  46623581 accaatccaatcacgcaccatatgccaaagtgaaccaaaagtgttacataacaaaaaaaagatgttgagccgattcaggatgaccgcaaccagcga---- 46623676  T
Q  218 cacacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaacctt 317  Q
    ||||  ||||||| || | || |||||||| ||  |||||||| ||  |||| |||||||||||||| |||||||  |||||||| ||||| || |||||    
T  46623677 cacataaggacatatcagtcggcaacacccttcgagcaatcaagttattcttcgttggtaaacgatcccggatgagtctccacgcaaaaactgatacctt 46623776  T
Q  318 caagagaacctttttgtgccacaccaa 344  Q
    |||| |||||| |||||||||||||||    
T  46623777 caagggaacctgtttgtgccacaccaa 46623803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 30385961 - 30386025
Alignment:
Q  15 cagacacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatga 80  Q
    |||||||||||||  || |||||||||||||| ||| |||||||||||||| ||||||||||||||    
T  30385961 cagacacatagaagccatataagttgcataaa-gaatgtctagcaacaccaccacctgtcaaatga 30386025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 45235711 - 45235784
Alignment:
Q  15 cagacacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactg 88  Q
    ||||||||| |||  || || |||||||||||||||||||||||||  ||| |||||||||||||| |||||||    
T  45235711 cagacacatggaagccatattagttgcataaaagaacgtctagcaattccaccacctgtcaaatgagtaaactg 45235784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 28327135 - 28327182
Alignment:
Q  33 ataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatga 80  Q
    ||||||||||||||||||||||||||| ||||| ||||| ||||||||    
T  28327135 ataagttgcataaaagaacgtctagcagcaccaccacctatcaaatga 28327182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 46623483 - 46623538
Alignment:
Q  33 ataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactg 88  Q
    ||||||||||||||||||||||||| |||| || |||||||||||| | |||||||    
T  46623483 ataagttgcataaaagaacgtctagaaacaacaccacctgtcaaataagtaaactg 46623538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 3104685 - 3104737
Alignment:
Q  36 agttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactg 88  Q
    ||||||||||||||||||||||||  | || ||| ||||||||||||||||||    
T  3104685 agttgcataaaagaacgtctagcattagcaccacttgtcaaatgaataaactg 3104737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 13439835 - 13439879
Alignment:
Q  36 agttgcataaaagaacgtctagcaacaccatcacctgtcaaatga 80  Q
    |||||||||||||||||||||||| ||||| ||||| ||||||||    
T  13439835 agttgcataaaagaacgtctagcagcaccaccacctatcaaatga 13439879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 15654066 - 15654011
Alignment:
Q  33 ataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactg 88  Q
    ||||||||||||||||||||||||| |||| || ||||| |||||| | |||||||    
T  15654066 ataagttgcataaaagaacgtctagaaacagcaccacctatcaaataagtaaactg 15654011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 267 - 349
Target Start/End: Original strand, 43105332 - 43105414
Alignment:
Q  267 ctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaaccttcaagagaacctttttgtgccacaccaaatcca 349  Q
    |||||||||||| |||||   ||||| ||||||||| ||||| || ||||||| | ||||||  | |||||||||||||||||    
T  43105332 ctttgttggtaaccgatcgttgatgagcctccacgcaaaaactgacaccttcaggggaacctaatggtgccacaccaaatcca 43105414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 162; Significance: 4e-86; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 19 - 360
Target Start/End: Original strand, 32918082 - 32918432
Alignment:
Q  19 cacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactgnnnnnnnntgatcggaaatattatctgcgt 118  Q
    |||||||||  || || |||||||||||||| ||||||||||||||| |||||||||||||| |||||||        ||||| ||||||||||||| ||    
T  32918082 cacatagaagccaaattagttgcataaaagaccgtctagcaacaccaccacctgtcaaatgagtaaactgtaaaaaa-tgatcagaaatattatctgtgt 32918180  T
Q  119 c------------accaatccaatcttgcaccaaatgccacagagaacaaaa--gtattacacaataaaaagagatgttgtgccgtttcaggatgaccac 204  Q
    |            ||||||||||||| |||||||||| |||| ||||| |||  |||||||||||||||||||||||||| |||| ||||||||||||||    
T  32918181 ccaccccatagcaaccaatccaatctcgcaccaaatggcacatagaaccaaaaggtattacacaataaaaagagatgttgcgccgattcaggatgaccac 32918280  T
Q  205 aaccagcaattaacacacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcga 304  Q
    |||||||||    ||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  32918281 aaccagcaa----cacacaaggacatgtcaggcgacaacacccgtctagcaatcaaatttgtctttgttggtaaacgatctcggatgagcctccacgcga 32918376  T
Q  305 aaacggaaaccttcaagagaacctttttgtgccacaccaaatccagagcatagtct 360  Q
    ||||||| ||||||||| |||||| |||||| ||||||||||||||||||||||||    
T  32918377 aaacggacaccttcaagggaacctgtttgtgtcacaccaaatccagagcatagtct 32918432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 15 - 367
Target Start/End: Complemental strand, 6264577 - 6264217
Alignment:
Q  15 cagacacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactgnnnnnnnntgatcggaaatattatct 114  Q
    |||||||||||||  || || |||||||||||||||||| ||||| ||||| |||||||||||||| | |||||        |||||| ||||||||||     
T  6264577 cagacacatagaagccatattagttgcataaaagaacgtttagcagcaccaccacctgtcaaatgagtgaactgtaaaaaa-tgatcgaaaatattatcg 6264479  T
Q  115 gcgtc------------accaatccaatcttgcaccaaatgccacagagaa-caaaagtattacacaataaaaagagatgttgtgccgtttcaggatgac 201  Q
    |||||            |||||| |||||| ||||||||||||| |||||| ||||||||| |||||||||||| ||||||||||||| ||| |||||||    
T  6264478 gcgtccaccccatagcaaccaatacaatctcgcaccaaatgccatagagaatcaaaagtatcacacaataaaaaaagatgttgtgccgattcgggatgac 6264379  T
Q  202 cacaaccagcaattaacacacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacg 301  Q
    ||||||||||||    || ||||||||||||| ||||||||||||||||| | ||||||||||||| |||| ||||||| |||||| |||| |||||| |    
T  6264378 cacaaccagcaa----catacgaggacatgtcaggcgacaacacccgtctagaaatcaaatttgtccttgtcggtaaacaatcacgaatgagcctccatg 6264283  T
Q  302 cgaaaacggaaaccttcaagagaacctttttgtgccacaccaaatccagagcatagtctacaacct 367  Q
    ||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||| ||||    
T  6264282 cgaaaacggaaaccttcaaggaaacctgtttgtgccacaccaaatccagagcatagtctacgacct 6264217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 15 - 321
Target Start/End: Complemental strand, 15500025 - 15499711
Alignment:
Q  15 cagacacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactgnnnnnnnntgatcggaaatattatct 114  Q
    |||||||||||||  || || ||||||| |||||| ||||||||||||||| |||||| ||||||| |||||||        |||||||||||||||| |    
T  15500025 cagacacatagaagccaaatgagttgcaaaaaagaccgtctagcaacaccaccacctgacaaatgagtaaactgaagaaaa-tgatcggaaatattattt 15499927  T
Q  115 gcgtc------------accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgac 201  Q
    | |||            ||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||    
T  15499926 gtgtccaccccacagcaaccaatccaatcacgcaccaaatgccacagagaaccaaaagtattacacaataaaaagagatgttgcgccgattcaggatgac 15499827  T
Q  202 cacaaccagcaattaacacacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacg 301  Q
    ||||||||||||    |||||||||||||||| |||  |||||||||||| ||||||||||||||| |||||||||||| ||||||||||| ||||||||    
T  15499826 cacaaccagcaa----cacacgaggacatgtcaggcaccaacacccgtctagcaatcaaatttgtccttgttggtaaacaatcacggatgagcctccacg 15499731  T
Q  302 cgaaaacggaaaccttcaag 321  Q
    | |||||||| || ||||||    
T  15499730 caaaaacggacactttcaag 15499711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 15 - 362
Target Start/End: Original strand, 34480717 - 34481072
Alignment:
Q  15 cagacacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactgnnnnnnnntgatcggaaatattatct 114  Q
    |||||||||||||  || ||||||||||||||||||||||||||| ||||| |||||| |||| || | |||||        |||| |||||||||||||    
T  34480717 cagacacatagaagccatataagttgcataaaagaacgtctagcagcaccaccacctgccaaaagagtgaactgtaaaaaa-tgattggaaatattatct 34480815  T
Q  115 gcgtc------------accaatccaatcttgcaccaaatgccacagagaacaaaag-tattacacaataaaaagagatgttgtgccgtttcaggatgac 201  Q
    | |||            ||||||||||||| |||||||||||||||  |||| |||| ||| |||| |||| || || ||||| |||| |||||||| ||    
T  34480816 gtgtccaccccatagcaaccaatccaatctcgcaccaaatgccacatcgaaccaaaggtatcacacgataagaaaaggtgttgggccgattcaggataac 34480915  T
Q  202 cacaaccagcaattaacacacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacg 301  Q
    |||  |||||||    ||||||| |||||||| ||||| | ||||||||| | ||||||||||  | |||| |||||||| ||||| | || ||||||||    
T  34480916 cacccccagcaa----cacacgaagacatgtcaggcgatagcacccgtctagaaatcaaatttaaccttgtcggtaaacggtcacgaaggagcctccacg 34481011  T
Q  302 cgaaaacggaaaccttcaagagaacctttttgtgccacaccaaatccagagcatagtctac 362  Q
    | |||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||    
T  34481012 caaaaacggaaaccttcaagggaacctgtttgtgccacaccaaatccaaagcatagtctac 34481072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 121 - 343
Target Start/End: Complemental strand, 10487182 - 10486963
Alignment:
Q  121 ccaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaaca 219  Q
    |||||||||||  |||||| || ||| || |||| |||||| |||||||| |||||||||||||| |||||||| |||||||| |||||||| |    ||    
T  10487182 ccaatccaatcacgcaccatataccaaagcgaaccaaaagtgttacacaacaaaaagagatgttgggccgtttccggatgaccgcaaccagcga----ca 10487087  T
Q  220 cacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaaccttca 319  Q
    ||  ||||||||||   ||| |||||||| |  ||||||||||| |||||||| |||||||||||  ||| ||  ||||| || ||||| |||| |||||    
T  10487086 cataaggacatgtcattcgataacacccgacgagcaatcaaattagtctttgtcggtaaacgatcctggaggagtctccaagcaaaaactgaaatcttca 10486987  T
Q  320 agagaacctttttgtgccacacca 343  Q
    || |||||| ||||||||||||||    
T  10486986 agggaacctgtttgtgccacacca 10486963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 158; Significance: 1e-83; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 36 - 359
Target Start/End: Original strand, 25317636 - 25317967
Alignment:
Q  36 agttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactgnnnnnnnntgatcggaaatattatctgcgtca------------cca 123  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||        |||||| |||||||||||| |||             |||    
T  25317636 agttgcataaaagaacgtctagcaacaccaccacctgtcaaatgagtaaactgtaaaaaa-tgatcgaaaatattatctgtgtccaccccatagcagcca 25317734  T
Q  124 atccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaacacac 222  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    |||||    
T  25317735 atccaatctcgcaccagatgccacagagaaccaaaagtattacacaataaaaagagatgttgcgccgattcaggatgaccacaaccagcaa----cacac 25317830  T
Q  223 gaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaaccttcaaga 322  Q
    ||||||||||| ||||||||||||||||| ||||||||||| ||| || ||||||||||||| ||||||| ||||||||| |||||||| |||||||||     
T  25317831 gaggacatgtcaggcgacaacacccgtctagcaatcaaattagtcctttttggtaaacgatctcggatgagcctccacgcaaaaacggacaccttcaagg 25317930  T
Q  323 gaacctttttgtgccacaccaaatccagagcatagtc 359  Q
    |||||| |||||||||||||||||||| |||||||||    
T  25317931 gaacctgtttgtgccacaccaaatccaaagcatagtc 25317967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 36 - 359
Target Start/End: Original strand, 26205130 - 26205461
Alignment:
Q  36 agttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactgnnnnnnnntgatcggaaatattatctgcgtca------------cca 123  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||        |||||| |||||||||||| |||             |||    
T  26205130 agttgcataaaagaacgtctagcaacaccaccacctgtcaaatgagtaaactgtaaaaaa-tgatcgaaaatattatctgtgtccaccccatagcagcca 26205228  T
Q  124 atccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaacacac 222  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    |||||    
T  26205229 atccaatctcgcaccagatgccacagagaaccaaaagtattacacaataaaaagagatgttgcgccgattcaggatgaccacaaccagcaa----cacac 26205324  T
Q  223 gaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaaccttcaaga 322  Q
    ||||||||||| ||||||||||||||||| ||||||||||| ||| || ||||||||||||| ||||||| ||||||||| |||||||| |||||||||     
T  26205325 gaggacatgtcaggcgacaacacccgtctagcaatcaaattagtcctttttggtaaacgatctcggatgagcctccacgcaaaaacggacaccttcaagg 26205424  T
Q  323 gaacctttttgtgccacaccaaatccagagcatagtc 359  Q
    |||||| |||||||||||||||||||| |||||||||    
T  26205425 gaacctgtttgtgccacaccaaatccaaagcatagtc 26205461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 19 - 359
Target Start/End: Original strand, 15673590 - 15673938
Alignment:
Q  19 cacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactgnnnnnnnntgatcggaaatattatctgcgt 118  Q
    |||||||||  || || |||||||||||||||||||||||||||||| |||||||||||||| | |||||        ||||| ||||||||||||| ||    
T  15673590 cacatagaagccaaattagttgcataaaagaacgtctagcaacaccaccacctgtcaaatgagtgaactgtaaaaaa-tgatctgaaatattatctgtgt 15673688  T
Q  119 c------------accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccaca 205  Q
    |            ||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||| | |||| |||||| |||||||||||||||    
T  15673689 ccaccccatagcaaccaatccaatctcgcaccaaatgccacagagaaccaaaagtatcacacaataaaaataaatgtcgtgccgattcaggatgaccaca 15673788  T
Q  206 accagcaattaacacacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaa 305  Q
    ||||||||    |||| ||||||||||| ||||||||||||| ||| ||||||||||||||| |||||||||||||||| ||||||| ||||||||| ||    
T  15673789 accagcaa----cacaagaggacatgtcaggcgacaacacccttctagcaatcaaatttgtccttgttggtaaacgatcccggatgagcctccacgcaaa 15673884  T
Q  306 aacggaaaccttcaagagaacctttttgtgccacaccaaatccagagcatagtc 359  Q
    ||||||  |||||||| ||||||  |||||||||||||||||||||||||||||    
T  15673885 aacggaccccttcaagggaacctgcttgtgccacaccaaatccagagcatagtc 15673938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 121 - 359
Target Start/End: Complemental strand, 23347728 - 23347493
Alignment:
Q  121 ccaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaaca 219  Q
    |||||||||||| ||||||||||||||||||||| |||||||| |||||||||||| |||||| |||||| |||||||||||||||||||||||    ||    
T  23347728 ccaatccaatctcgcaccaaatgccacagagaaccaaaagtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaa----ca 23347633  T
Q  220 cacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaaccttca 319  Q
    |||||||||||||| |||||   ||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||| |||||||||    
T  23347632 cacgaggacatgtcaggcgatggcacccgtctagcaatcaaatttgtccttgttggtaaacgatcacggatgagcctccacgcaaaaacgaaaaccttca 23347533  T
Q  320 agagaacctttttgtgccacaccaaatccagagcatagtc 359  Q
    || |||||| |||||||||||||||||||| |||||||||    
T  23347532 agggaacctgtttgtgccacaccaaatccatagcatagtc 23347493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 15 - 367
Target Start/End: Complemental strand, 8873205 - 8872845
Alignment:
Q  15 cagacacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactgnnnnnnnntgatcggaaatattatct 114  Q
    |||||||||||||  || || ||||||||||||||||||||| || ||||| |||||||||||||| | |||||        |||||| |||||||||||    
T  8873205 cagacacatagaagccatattagttgcataaaagaacgtctaacagcaccaccacctgtcaaatgagtgaactgtaaaaaa-tgatcgaaaatattatct 8873107  T
Q  115 gcgtc------------accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgac 201  Q
    |||||            | ||||||||||| |||||||||| |||||||||| |||||| | ||||||||||||  |||| ||||||| ||| |||||||    
T  8873106 gcgtccaccccatagcaagcaatccaatctcgcaccaaatgtcacagagaaccaaaagtgtcacacaataaaaaaggatgatgtgccgattcgggatgac 8873007  T
Q  202 cacaaccagcaattaacacacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacg 301  Q
    ||||||||||||    | |||||||||||||| ||||||||||||||||| | ||||||||||||| |||| |||||||||||||  |||| ||||||||    
T  8873006 cacaaccagcaa----cgcacgaggacatgtcaggcgacaacacccgtctagaaatcaaatttgtccttgtcggtaaacgatcacaaatgagcctccacg 8872911  T
Q  302 cgaaaacggaaaccttcaagagaacctttttgtgccacaccaaatccagagcatagtctacaacct 367  Q
    |||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||| ||||    
T  8872910 cgaaaacggaaaccttcaagggaaccagtttgtgccacaccaaatccagagcatagtctacgacct 8872845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 120 - 344
Target Start/End: Original strand, 33629974 - 33630195
Alignment:
Q  120 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 218  Q
    ||||||||||||  |||||| |||||| || |||| |||||| |||||||| |||||||||||||| |||||||| |||||||| ||||||||     ||    
T  33629974 accaatccaatcacgcaccatatgccaaagcgaaccaaaagtgttacacaacaaaaagagatgttgggccgtttccggatgaccgcaaccagc----gac 33630069  T
Q  219 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaaccttc 318  Q
    |||  ||||||||||   ||| ||||||||||  ||||||||||| |||||||| ||||||||||| |||| ||| ||| | || ||||| |||| ||||    
T  33630070 acataaggacatgtcattcgataacacccgtcgagcaatcaaattagtctttgtcggtaaacgatctcggaggaatctctaagcaaaaactgaaatcttc 33630169  T
Q  319 aagagaacctttttgtgccacaccaa 344  Q
    ||| |||| | |||||||||||||||    
T  33630170 aagggaacatgtttgtgccacaccaa 33630195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 120 - 344
Target Start/End: Original strand, 1682917 - 1683138
Alignment:
Q  120 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 218  Q
    ||||||||||||  |||||| ||| || || |||| |||||| |||||||| |||||||||||||| |||||||| | |||||| |||||||| |    |    
T  1682917 accaatccaatcacgcaccatatgtcaaagcgaaccaaaagtgttacacaacaaaaagagatgttgggccgtttccgaatgaccgcaaccagcga----c 1683012  T
Q  219 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaaccttc 318  Q
    |||  ||||||||||   ||| ||||||||||  ||||||||||| |||||||| |||||||||||| ||| ||  ||||| || ||||| |||| ||||    
T  1683013 acataaggacatgtcattcgataacacccgtcgagcaatcaaattagtctttgtcggtaaacgatcaaggaggagtctccaagcaaaaactgaaatcttc 1683112  T
Q  319 aagagaacctttttgtgccacaccaa 344  Q
    ||| |||||| ||||| |||||||||    
T  1683113 aagggaacctgtttgtaccacaccaa 1683138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 13755226 - 13755291
Alignment:
Q  15 cagacacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatga 80  Q
    ||||||||||||| ||| || |||||||||||||||||||||||| ||||| ||||||||||||||    
T  13755226 cagacacatagaagtcatattagttgcataaaagaacgtctagcagcaccaccacctgtcaaatga 13755291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 120 - 194
Target Start/End: Original strand, 19349144 - 19349219
Alignment:
Q  120 accaatccaatcttgcaccaaatgccacagagaacaaaa-gtattacacaataaaaagagatgttgtgccgtttca 194  Q
    |||||| ||||||  |||||||||||||||| ||| ||| |||||||||||||||||||||||||| |||| ||||    
T  19349144 accaattcaatctcacaccaaatgccacagaaaaccaaatgtattacacaataaaaagagatgttgcgccgattca 19349219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 19349047 - 19349096
Alignment:
Q  36 agttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaa 85  Q
    |||||||||||||| ||||||||||||||| |||||||||||||| ||||    
T  19349047 agttgcataaaagaccgtctagcaacaccaccacctgtcaaatgagtaaa 19349096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 23347824 - 23347772
Alignment:
Q  36 agttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactg 88  Q
    |||||||||||||||||||||||||||||| | |||||||||||| | |||||    
T  23347824 agttgcataaaagaacgtctagcaacaccaccgcctgtcaaatgagtgaactg 23347772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 120 - 211
Target Start/End: Original strand, 19256922 - 19257013
Alignment:
Q  120 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagc 211  Q
    ||||||||||||  |||||| |||||| | ||||| ||||||||||||||  ||||| || |||||||||||||||||| ||||  |||||||    
T  19256922 accaatccaatcacgcaccatatgccataaagaaccaaaagtattacacacaaaaaa-aggtgttgtgccgtttcaggaagaccgtaaccagc 19257013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 155; Significance: 6e-82; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 15 - 367
Target Start/End: Original strand, 22052388 - 22052748
Alignment:
Q  15 cagacacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactgnnnnnnnntgatcggaaatattatct 114  Q
    |||||||||||||  || || ||||||| |||||| ||||||||||||||| |||||| ||||||| |||||||        |||||||||||||||| |    
T  22052388 cagacacatagaagccaaatgagttgcaaaaaagaccgtctagcaacaccaccacctgacaaatgagtaaactgaagaaaa-tgatcggaaatattattt 22052486  T
Q  115 gcgtc------------accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgac 201  Q
    | |||            ||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||    
T  22052487 gtgtctaccccacagcaaccaatccaatcacgcaccaaatgccacagagaaccaaaagtattacacaataaaaagagatgttgcgccgattcaggatgac 22052586  T
Q  202 cacaaccagcaattaacacacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacg 301  Q
    ||||||||||||    ||||||||||||| || |||  |||||||| ||| ||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  22052587 cacaaccagcaa----cacacgaggacatatcaggcaccaacacccttctagcaatcaaatttgtccttgttggtaaacgatcacggatgagcctccacg 22052682  T
Q  302 cgaaaacggaaaccttcaagagaacctttttgtgccacaccaaatccagagcatagtctacaacct 367  Q
    |||||||||| ||||||||| |||||| ||||||||||||||||||||| ||| ||||| ||||||    
T  22052683 cgaaaacggacaccttcaagggaacctgtttgtgccacaccaaatccagggcaaagtctgcaacct 22052748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 33 - 359
Target Start/End: Original strand, 13549903 - 13550237
Alignment:
Q  33 ataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactgnnnnnnnntgatcggaaatattatctgcgtc------------a 120  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||        |||||||||||||||| || |||            |    
T  13549903 ataagttgcataaaagaacgtctagcaacaccaccacctgtcaaatgagtaaactgtaaaaaa-tgatcggaaatattatatgtgtccaccccatagcaa 13550001  T
Q  121 ccaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaaca 219  Q
    |||||||||||  |||||| |||||||||||| | ||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||    |||||    
T  13550002 ccaatccaatcacgcaccagatgccacagagagccaaaagtattacacaataaaaagagatgttgcaccgattcaggatgaccacaaccag----taaca 13550097  T
Q  220 cacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaaccttca 319  Q
    ||||||||||||||  |||||||||||||||| ||||||||||| ||| |||||||||||||||| ||||||| ||||||| |||||||| | |||||||    
T  13550098 cacgaggacatgtcatgcgacaacacccgtctagcaatcaaattagtccttgttggtaaacgatctcggatgagcctccacacgaaaacgaacaccttca 13550197  T
Q  320 agagaacctttttgtgccacaccaaatccagagcatagtc 359  Q
    || |||||| |||||||||||||||||||| |||||||||    
T  13550198 agggaacctgtttgtgccacaccaaatccaaagcatagtc 13550237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 134 - 359
Target Start/End: Original strand, 43627390 - 43627612
Alignment:
Q  134 gcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaacacacgaggacatgt 232  Q
    ||||||||||||||| ||||| |||||||| |||||||||||| |||||| | |||| |||||||||||||||| ||||||    ||| ||| |||||||    
T  43627390 gcaccaaatgccacaaagaaccaaaagtatcacacaataaaaatagatgtcgagccgattcaggatgaccacaatcagcaa----cacgcgaagacatgt 43627485  T
Q  233 cgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaaccttcaagagaaccttttt 332  Q
    | ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||| ||| |||||| |||    
T  43627486 caggcgacaacacccgtctagcaatcaaatttgtccttgttggtaaacgatcacggatgagcctccacgcaaaaacggaaacctttaagggaacctgttt 43627585  T
Q  333 gtgccacaccaaatccagagcatagtc 359  Q
    ||||||||||||||||| | |||||||    
T  43627586 gtgccacaccaaatccaaatcatagtc 43627612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 135 - 359
Target Start/End: Complemental strand, 31085885 - 31085664
Alignment:
Q  135 caccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaacacacgaggacatgtc 233  Q
    |||||||||||| || |||| ||||||||| ||||||||||||||||||||||||||||||||||| || || |||||||    ||||||||||||||||    
T  31085885 caccaaatgccaaagcgaaccaaaagtatttcacaataaaaagagatgttgtgccgtttcaggatgtccgcacccagcaa----cacacgaggacatgtc 31085790  T
Q  234 gggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaaccttcaagagaacctttttg 333  Q
     | ||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||| |    ||||||||||||| ||||    
T  31085789 agacgacagcacccgtctagcaatcaaatttgtctttcttggtaaacgatcacggatgagcctccacgcaaaaacgaattatttcaagagaacctgtttg 31085690  T
Q  334 tgccacaccaaatccagagcatagtc 359  Q
    ||||||||||||||||||||||||||    
T  31085689 tgccacaccaaatccagagcatagtc 31085664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 124 - 351
Target Start/End: Original strand, 33547753 - 33547977
Alignment:
Q  124 atccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaacacac 222  Q
    ||||||||  ||||||||||||||||||||| |||||||| |||||||||||| |||||| | |||| |||||||||||| || |||||||    |||||    
T  33547753 atccaatcacgcaccaaatgccacagagaaccaaaagtatcacacaataaaaatagatgtcgagccgattcaggatgaccgcagccagcaa----cacac 33547848  T
Q  223 gaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaaccttcaaga 322  Q
     | |||||||| | ||||||||||||||  ||||||||||||||| |||||| |||||||||||||| || ||||||||| ||||||||||||||||||     
T  33547849 aaagacatgtcagacgacaacacccgtcgagcaatcaaatttgtccttgttgataaacgatcacggaggagcctccacgcaaaaacggaaaccttcaagg 33547948  T
Q  323 gaacctttttgtgccacaccaaatccaga 351  Q
    |||||| ||||||||||||||||||||||    
T  33547949 gaacctgtttgtgccacaccaaatccaga 33547977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 15 - 362
Target Start/End: Complemental strand, 9949643 - 9949288
Alignment:
Q  15 cagacacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactgnnnnnnnntgatcggaaatattatct 114  Q
    |||||||||||||  || ||||||||||||||||||||||||||| ||||| |||| | |||| || | |||||        ||||||||||||||||||    
T  9949643 cagacacatagaagccatataagttgcataaaagaacgtctagcagcaccaccaccagccaaaagagtgaactgtaaaaaa-tgatcggaaatattatct 9949545  T
Q  115 gcgtc------------accaatccaatcttgcaccaaatgccacagagaacaaaag-tattacacaataaaaagagatgttgtgccgtttcaggatgac 201  Q
    | |||            ||||||||||||| |||||||||||||||  |||| |||| ||| |||| |||| || || ||||| |||| |||||||||||    
T  9949544 gtgtccaccccatagcaaccaatccaatctcgcaccaaatgccacatcgaaccaaaggtatcacacgataagaaaaggtgttgggccgattcaggatgac 9949445  T
Q  202 cacaaccagcaattaacacacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacg 301  Q
    |||| |||||||    ||||||| |||||||| ||||| | ||||||||| | ||||||||||  | |||| |||||||| ||||| | || ||||||||    
T  9949444 cacacccagcaa----cacacgaagacatgtcaggcgatagcacccgtctagaaatcaaatttaaccttgtcggtaaacggtcacgaaggagcctccacg 9949349  T
Q  302 cgaaaacggaaaccttcaagagaacctttttgtgccacaccaaatccagagcatagtctac 362  Q
    | |||||||||||||||||   ||||| |||||||||||||||||||| | ||||||||||    
T  9949348 caaaaacggaaaccttcaaagaaacctgtttgtgccacaccaaatccaaaacatagtctac 9949288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 159 - 354
Target Start/End: Complemental strand, 26180149 - 26179959
Alignment:
Q  159 gtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaacacacgaggacatgtcgggcgacaacacccgtcttgcaatc 258  Q
    |||||||||||||||||||| ||||||| |||||||||||| |  || ||||||||    |||  || | ||||| ||||||| ||||| ||| |||||     
T  26180149 gtattacacaataaaaagaggtgttgtgtcgtttcaggatgtctgcacccagcaat----acaaaagcaaatgtcaggcgacagcaccc-tctagcaatt 26180055  T
Q  259 aaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaaccttcaagagaacctttttgtgccacaccaaatccagagca 354  Q
    |||||| ||||||||||||| ||||||||||||| | ||||||| ||||| || ||||||||  |||  |  |||| |||||||||||||| ||||    
T  26180054 aaatttatctttgttggtaaccgatcacggatgagcatccacgcaaaaactgataccttcaacggaatatgattgtaccacaccaaatccaaagca 26179959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 186 - 348
Target Start/End: Original strand, 45421463 - 45421621
Alignment:
Q  186 gccgtttcaggatgaccacaaccagcaattaacacacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatca 285  Q
    |||| |||||||||||| |||||||| |    ||||  ||||||| || | || |||||||| ||  |||||||| || ||||| ||||||||||||||     
T  45421463 gccgattcaggatgaccgcaaccagcga----cacataaggacatatcagtcggcaacacccttcgagcaatcaagttagtcttcgttggtaaacgatcc 45421558  T
Q  286 cggatgaacctccacgcgaaaacggaaaccttcaagagaacctttttgtgccacaccaaatcc 348  Q
     ||||||  |||||| | ||||| || ||||||||| |||||| |||||| ||||||||||||    
T  45421559 tggatgagtctccacacaaaaactgataccttcaagggaacctgtttgtgtcacaccaaatcc 45421621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 43627278 - 43627325
Alignment:
Q  33 ataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatga 80  Q
    ||||||||||||||||||||||||||| ||||| ||||| ||||||||    
T  43627278 ataagttgcataaaagaacgtctagcagcaccaccacctatcaaatga 43627325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 31085995 - 31085943
Alignment:
Q  36 agttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactg 88  Q
    ||||||||||||||||||||||||  |||| |||||| ||||||| |||||||    
T  31085995 agttgcataaaagaacgtctagcattaccaccacctgacaaatgagtaaactg 31085943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 33547654 - 33547698
Alignment:
Q  36 agttgcataaaagaacgtctagcaacaccatcacctgtcaaatga 80  Q
    |||||||||||||||||||||||| ||||| ||||| ||||||||    
T  33547654 agttgcataaaagaacgtctagcagcaccaccacctatcaaatga 33547698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 45421297 - 45421342
Alignment:
Q  33 ataagttgcataaaagaacgtctagcaacaccatcacctgtcaaat 78  Q
    ||||||||||||||||||||||||| ||||  | ||||||||||||    
T  45421297 ataagttgcataaaagaacgtctagaaacattaccacctgtcaaat 45421342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 151; Significance: 1e-79; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 121 - 359
Target Start/End: Complemental strand, 2813762 - 2813527
Alignment:
Q  121 ccaatccaatcttgcaccaaatgccacagagaa-caaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaaca 219  Q
    |||||||||||  |||||||||||||||||||| |||||||||  ||||||||||| |||||| |||||| |||||||||||||||||||||||    ||    
T  2813762 ccaatccaatcgcgcaccaaatgccacagagaatcaaaagtatcgcacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaa----ca 2813667  T
Q  220 cacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaaccttca 319  Q
    |||||||||||||| ||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  2813666 cacgaggacatgtcaggcgacagcacccgtctagcaatcaaatttgtccttgttggtaaacgatcacggatgagcctccacgcaaaaacggaaaccttca 2813567  T
Q  320 agagaacctttttgtgccacaccaaatccagagcatagtc 359  Q
    || |||||| |||||||||||||||||||| |||||||||    
T  2813566 agggaacctgtttgtgccacaccaaatccatagcatagtc 2813527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 36 - 359
Target Start/End: Complemental strand, 6176836 - 6176505
Alignment:
Q  36 agttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactgnnnnnnnntgatcggaaatattatctgcgtc------------acca 123  Q
    |||||||||||||||||||||||||||||| |||||||||||||| | |||||        ||||| |||||||||||||  ||            ||||    
T  6176836 agttgcataaaagaacgtctagcaacaccaccacctgtcaaatgagtgaactgtaaaaaa-tgatctgaaatattatctgtatccaccccatagcaacca 6176738  T
Q  124 atccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaacacac 222  Q
    ||||||||| ||||||||||||||||||||| |||||||| |||||||||||| |||||  |||||| |||||||||||||||||||||||    |||||    
T  6176737 atccaatctcgcaccaaatgccacagagaactaaaagtatcacacaataaaaatagatggcgtgccgattcaggatgaccacaaccagcaa----cacac 6176642  T
Q  223 gaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaaccttcaaga 322  Q
    ||||||||||| ||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||| |||||| || ||||| ||||||||||||     
T  6176641 gaggacatgtcaggcgacaacacccgtctagcaatcaaattagtccttgttggtaaacgatcacggatgagcctccatgcaaaaacagaaaccttcaagg 6176542  T
Q  323 gaacctttttgtgccacaccaaatccagagcatagtc 359  Q
    |||||| |||||||||||| ||||||| |||||||||    
T  6176541 gaacctgtttgtgccacacaaaatccatagcatagtc 6176505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 15 - 359
Target Start/End: Original strand, 29309169 - 29309521
Alignment:
Q  15 cagacacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactgnnnnnnnntgatcggaaatattatct 114  Q
    ||||||||||||| ||| || |||||||||||||||||||||||| ||||| |||||||||||||| | |||||        ||||| || ||||||| |    
T  29309169 cagacacatagaagtcatattagttgcataaaagaacgtctagcagcaccaccacctgtcaaatgagtgaactgtaaaaaa-tgatctgatatattattt 29309267  T
Q  115 gcgtc------------accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgac 201  Q
    | |||            |||||||||| || |||||||||| |||||||||| |||||||| |||||||||||| |||||| |||||| |||||||||||    
T  29309268 gtgtccaccccacagcaaccaatccaagctcgcaccaaatgtcacagagaaccaaaagtatcacacaataaaaatagatgtcgtgccgattcaggatgac 29309367  T
Q  202 cacaaccagcaattaacacacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacg 301  Q
    ||||||||||||    |||||||||||||||| ||||||| ||||||||| |||||||| |||||| ||||||||||||||||||||| || || |||||    
T  29309368 cacaaccagcaa----cacacgaggacatgtcaggcgacagcacccgtctagcaatcaagtttgtccttgttggtaaacgatcacggaggagccgccacg 29309463  T
Q  302 cgaaaacggaaaccttcaagagaacctttttgtgccacaccaaatccagagcatagtc 359  Q
      |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  29309464 taaaaacggaaaccttcaagggaacctgtttgtgccacaccaaatccagagcatagtc 29309521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 124 - 359
Target Start/End: Original strand, 23601654 - 23601886
Alignment:
Q  124 atccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaacacac 222  Q
    ||||||||| ||||||||||||||||||||| |||||||| |||||||||||| |||||| |  ||| |||||||||||||||| ||||||    |||||    
T  23601654 atccaatctcgcaccaaatgccacagagaaccaaaagtatcacacaataaaaatagatgtcgaaccgattcaggatgaccacaaacagcaa----cacac 23601749  T
Q  223 gaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaaccttcaaga 322  Q
    || |||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||| ||||||| ||||     
T  23601750 gaagacatgtcaggcgacaacacccgtctagcaatcaaatttgtccttgttggtaaacgatcacggatgagcctccacgcaaaaacagaaacctccaagg 23601849  T
Q  323 gaacctttttgtgccacaccaaatccagagcatagtc 359  Q
    |||||| |||||||||||||||||||||| |||||||    
T  23601850 gaacctgtttgtgccacaccaaatccagatcatagtc 23601886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 134 - 317
Target Start/End: Original strand, 7146932 - 7147112
Alignment:
Q  134 gcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaacacacgaggacatgt 232  Q
    ||||||||||||||||||||| |||||||| |||||||||||| |||||| | |||| |||||||||||||||| ||||||    ||||||| |||||||    
T  7146932 gcaccaaatgccacagagaaccaaaagtatcacacaataaaaatagatgtcgagccgattcaggatgaccacaatcagcaa----cacacgaagacatgt 7147027  T
Q  233 cgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaacctt 317  Q
    | ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  7147028 caggcgacaacacccgtctagcaatcaaatttgtccttgttggtaaacgatcacggatgagcctccacgcaaaaacggaaacctt 7147112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 15 - 362
Target Start/End: Complemental strand, 25873491 - 25873134
Alignment:
Q  15 cagacacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactgnnnnnnnntgatcggaaatattatct 114  Q
    |||||||||||||  || || ||||||||||||||||| |||||| ||||| |||||| ||||||| | |||||        ||||||||||||||||||    
T  25873491 cagacacatagaagccatatgagttgcataaaagaacgcctagcagcaccaccacctgccaaatgagtgaactgtaaaaaaatgatcggaaatattatct 25873392  T
Q  115 gcgtca------------ccaatccaatcttgcaccaaatgccacagagaacaaaag-tattacacaataaaaaga-gatgttgtgccgtttcaggatga 200  Q
    |||||             |||||||||||| |||||||||||||||  |||| |||| ||| |||| ||||||| | | |||||||||| ||||||||||    
T  25873391 gcgtccaccccatagcatccaatccaatctcgcaccaaatgccacatcgaaccaaaggtatcacacgataaaaaaaaggtgttgtgccgattcaggatga 25873292  T
Q  201 ccacaaccagcaattaacacacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccac 300  Q
    ||||| |||||||    ||||||| ||||||||  |||| ||||||||||| | |||||||||| || |||| |||||||| ||||| | || |||||||    
T  25873291 ccacacccagcaa----cacacgaagacatgtcaagcgataacacccgtctagaaatcaaatttatccttgtcggtaaacggtcacgaaggagcctccac 25873196  T
Q  301 gcgaaaacggaaaccttcaagagaacctttttgtgccacaccaaatccagagcatagtctac 362  Q
    || |||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||    
T  25873195 gcaaaaacggaaaccttcaagggaacctgtttgtgccacaccaaatccaaagcatagtctac 25873134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 169 - 359
Target Start/End: Complemental strand, 14904379 - 14904193
Alignment:
Q  169 ataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaacacacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtct 268  Q
    ||||||| |||||| |||||| |||||||||||||||||||||||    || ||||||||||||| ||| ||| ||||||||| |||||||||||||||     
T  14904379 ataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaa----catacgaggacatgtcaggcaacagcacccgtctagcaatcaaatttgtcc 14904284  T
Q  269 ttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaaccttcaagagaacctttttgtgccacaccaaatccagagcatagtc 359  Q
    |||||||||||||||||||||||| |||| |||| |||| ||||||||||||| |||||| |||||||||||||||||||| |||||||||    
T  14904283 ttgttggtaaacgatcacggatgagcctcaacgcaaaaatggaaaccttcaagggaacctgtttgtgccacaccaaatccatagcatagtc 14904193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 120 - 354
Target Start/End: Original strand, 9378974 - 9379205
Alignment:
Q  120 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 218  Q
    ||||||||||||  |||||| |||||| |  |||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||        
T  9378974 accaatccaatcacgcaccatatgccaaatcgaaccaaaagtgttacacaataaaaagaggtgttgtgccgtttcaggatgaccacaaccatcaat---- 9379069  T
Q  219 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaaccttc 318  Q
    |||| |||||||||  | |||||||||| ||||  ||||||||||||| ||||||||||||||||||| ||||| ||||||||| ||||| || ||||||    
T  9379070 acacaaggacatgtaagacgacaacacctgtctaacaatcaaatttgtttttgttggtaaacgatcacagatgagcctccacgcaaaaactgataccttc 9379169  T
Q  319 aagagaacctttttgtgccacaccaaatccagagca 354  Q
    |||| |||||   |||||||||||||||||| ||||    
T  9379170 aagaaaacctgactgtgccacaccaaatccaaagca 9379205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 120 - 343
Target Start/End: Complemental strand, 49732196 - 49731975
Alignment:
Q  120 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgttt-caggatgaccacaaccagcaattaa 217  Q
    ||||||||||||  | |||| |||||| || |||| |||||| |||||||| |||||||||||||| ||||||| | |||||||| |||||||| |        
T  49732196 accaatccaatcacgtaccacatgccaaagcgaaccaaaagtgttacacaacaaaaagagatgttgggccgttttccggatgaccgcaaccagcga---- 49732101  T
Q  218 cacacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaacctt 317  Q
    ||||  ||||||||||   ||| ||||||||||  ||||||||||| |||||||| ||||||||||| |||| ||  ||||| || ||||| |||| |||    
T  49732100 cacataaggacatgtcattcgataacacccgtcgagcaatcaaattagtctttgtcggtaaacgatcccggaggagtctccaagcaaaaactgaaatctt 49732001  T
Q  318 caagagaacctttttgtgccacacca 343  Q
    |||| |||||| ||||||||||||||    
T  49732000 caagggaacctgtttgtgccacacca 49731975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 33 - 348
Target Start/End: Complemental strand, 30167706 - 30167383
Alignment:
Q  33 ataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactgnnnnnnnntgatcggaaatattatctgcgtc------------a 120  Q
    ||||||||||||||||||||||||| |||| || |||| ||||||| | |||||||        |||||||||||||||||||| ||            |    
T  30167706 ataagttgcataaaagaacgtctagaaacagcaccacccgtcaaataagtaaactgaagaaaa-tgatcggaaatattatctgcatccacccccgcacaa 30167608  T
Q  121 ccaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaaca 219  Q
    |||||||||||  ||||||||||||| || |||| |||||| ||||| || ||||| ||||||   |||| |||||| ||||| |||||||| |    ||    
T  30167607 ccaatccaatcacgcaccaaatgccaaagcgaaccaaaagtgttacaaaacaaaaaaagatgtgtagccgattcaggctgaccgcaaccagcga----ca 30167512  T
Q  220 cacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaaccttca 319  Q
    ||  |||| || || | || |||||||| ||  |||||||| || ||||| |||||||| |||||||||| ||  |||||||| ||||| ||||| ||||    
T  30167511 cataaggagatatcagtcggcaacacccttcgagcaatcaagttagtcttcgttggtaatcgatcacggaggagtctccacgcaaaaactgaaacattca 30167412  T
Q  320 agagaacctttttgtgccacaccaaatcc 348  Q
    || |||||| |||||||||||||||||||    
T  30167411 agggaacctgtttgtgccacaccaaatcc 30167383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 2813875 - 2813806
Alignment:
Q  19 cacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactg 88  Q
    ||||||||| ||| || ||||||||||| |||||||||||||||||| |||||||||||||| | |||||    
T  2813875 cacatagaagtcatattagttgcataaacgaacgtctagcaacaccaccacctgtcaaatgagtgaactg 2813806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 23601555 - 23601599
Alignment:
Q  36 agttgcataaaagaacgtctagcaacaccatcacctgtcaaatga 80  Q
    |||||||||||||||||||||||| ||||| ||||| ||||||||    
T  23601555 agttgcataaaagaacgtctagcagcaccaccacctatcaaatga 23601599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 28675310 - 28675238
Alignment:
Q  13 cacagacacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaa 85  Q
    |||||||||| |||| ||| || |||||||||||||||||||||||   |||||||||| ||| |||| ||||    
T  28675310 cacagacacacagaagtcaaatgagttgcataaaagaacgtctagctttaccatcacctatcatatgagtaaa 28675238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 7146820 - 7146867
Alignment:
Q  33 ataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatga 80  Q
    |||||||||| |||||||||||||||| ||||| ||||| ||||||||    
T  7146820 ataagttgcaaaaaagaacgtctagcagcaccaccacctatcaaatga 7146867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 28675148 - 28675097
Alignment:
Q  162 ttacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaa 213  Q
    ||||||||||||||||||||||||||||||  |||| | ||||| |||||||    
T  28675148 ttacacaataaaaagagatgttgtgccgttcgaggaagtccacacccagcaa 28675097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 151; Significance: 1e-79; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 15 - 352
Target Start/End: Original strand, 14119526 - 14119877
Alignment:
Q  15 cagacacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactgnnnnnnnntgatcggaaatattatct 114  Q
    |||||||||| ||  || || |||||||||||||| ||||||||||||||| |||||||||||||| |||||||        ||||||||||||||||||    
T  14119526 cagacacataaaagccatattagttgcataaaagaccgtctagcaacaccaccacctgtcaaatgagtaaactgtaaaaaa-tgatcggaaatattatct 14119624  T
Q  115 gcgtca-----------------ccaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcagg 196  Q
    |||||                  |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||    
T  14119625 gcgtccaccccatagcaaccaatccaatccaatctcgcaccaaatgccacagagaaccaaaagtattacacaataaaaagagatgttgcgccgattcagg 14119724  T
Q  197 atgaccacaaccagcaattaacacacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacct 296  Q
    ||||||||||||| |||    |||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||    
T  14119725 atgaccacaaccaacaa----cacacgaggacatgtcaggcgacaacacccgtctagcaatcaaatttgtccttgttggtaaacgatcacggatgagcct 14119820  T
Q  297 ccacgcgaaaacggaaacctt-caagagaacctttttgtgccacaccaaatccagag 352  Q
    ||||||||||||  ||||||| ||| | ||||| |||||||||||||||||||||||    
T  14119821 ccacgcgaaaacaaaaaccttacaaaaaaacctgtttgtgccacaccaaatccagag 14119877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 120 - 356
Target Start/End: Original strand, 3692504 - 3692737
Alignment:
Q  120 accaatccaatcttgcaccaaatgccacagagaa-caaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 218  Q
    |||||||||| || |||||||||||||||||||  ||||||||| || ||||||||| |||||| |||||| ||||||||||||||| |||||||    |    
T  3692504 accaatccaagctcgcaccaaatgccacagagagtcaaaagtatcacgcaataaaaatagatgtcgtgccgattcaggatgaccacagccagcaa----c 3692599  T
Q  219 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaaccttc 318  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| || || || ||| |||||| ||||||||    
T  3692600 acacgaggacatgtccggcgacaacacccgtctagcaatcaaatttgtccttgttggtaaacgatcacggaggagccgccgcgcaaaaacgaaaaccttc 3692699  T
Q  319 aagagaacctttttgtgccacaccaaatccagagcata 356  Q
    ||| |||||| ||| ||||||||||||| |||||||||    
T  3692700 aagggaacctgtttttgccacaccaaattcagagcata 3692737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 124 - 359
Target Start/End: Complemental strand, 32353556 - 32353324
Alignment:
Q  124 atccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaacacac 222  Q
    ||||||||| ||||||||||||||||||||| |||||||| ||||| |||||| |||||| |  ||| |||||||||||||||  ||||||    ||| |    
T  32353556 atccaatctcgcaccaaatgccacagagaaccaaaagtatcacacattaaaaatagatgtcgatccgattcaggatgaccacattcagcaa----cactc 32353461  T
Q  223 gaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaaccttcaaga 322  Q
    || |||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||     
T  32353460 gaagacatgtcaggcgacaacacccgtctagcaatcaaatttgtccttgttggtaaacgatcacggatgagcctccacgcaaaaacggaaaccttcaagg 32353361  T
Q  323 gaacctttttgtgccacaccaaatccagagcatagtc 359  Q
    |||||| |||||||||||| ||||||| | |||||||    
T  32353360 gaacctgtttgtgccacactaaatccatatcatagtc 32353324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 15 - 362
Target Start/End: Original strand, 37530325 - 37530682
Alignment:
Q  15 cagacacatagaaatcacataagttgcataaaagaacgtctagca--acaccatcacctgtcaaatgaataaactgnnnnnnnntgatcggaaatattat 112  Q
    |||||||||||||  || || ||||||||||||||||||||||||  |||||| |||||||||||||| | |||||        |||||| |||||||||    
T  37530325 cagacacatagaagccatattagttgcataaaagaacgtctagcagaacaccaccacctgtcaaatgagtgaactgtaaaaaa-tgatcgaaaatattat 37530423  T
Q  113 ctgcgtca------------ccaatccaatcttgcaccaaatgccacagagaacaaaag-tattacacaataaaaagagatgttgtgccgtttcaggatg 199  Q
    |||||||             |||||||||||| |||||||||||||||| |||| |||| ||| |||||||||||| || |||||||||| |||||||||    
T  37530424 ctgcgtccaccccatagcatccaatccaatctcgcaccaaatgccacagcgaaccaaaggtatcacacaataaaaaaaggtgttgtgccgattcaggatg 37530523  T
Q  200 accacaaccagcaattaacacacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctcca 299  Q
    ||||||||||||||    | |||||||||||||| ||||| | ||||||||| | ||||||||| ||| |||| | |||||| ||||| | || ||||||    
T  37530524 accacaaccagcaa----cgcacgaggacatgtcaggcgatagcacccgtctagaaatcaaattcgtccttgtcgataaacggtcacgaaggagcctcca 37530619  T
Q  300 cgcgaaaacggaaaccttcaagagaacctttttgtgccacaccaaatccagagcatagtctac 362  Q
    ||| |||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||    
T  37530620 cgcaaaaacggaaaccttcaagggaacctgtttgtgccacaccaaatccaaagcatagtctac 37530682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 124 - 351
Target Start/End: Complemental strand, 48073690 - 48073466
Alignment:
Q  124 atccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaacacac 222  Q
    ||||||||  ||||||||||||||||||||| |||||||| |||||||||||| |||||| | |||| ||||||||||||  | |||||    |||||||    
T  48073690 atccaatcacgcaccaaatgccacagagaaccaaaagtatcacacaataaaaatagatgtcgagccgattcaggatgaccgtagccagc----aacacac 48073595  T
Q  223 gaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaaccttcaaga 322  Q
    || |||||||| | ||||||||||||||  ||||||||||||||| |||||| |||||||||||||| || ||||||||| ||||||||||||||||||     
T  48073594 gaagacatgtcagacgacaacacccgtcgagcaatcaaatttgtccttgttgttaaacgatcacggaggagcctccacgcaaaaacggaaaccttcaagg 48073495  T
Q  323 gaacctttttgtgccacaccaaatccaga 351  Q
    |||||| ||||||||||||||||||||||    
T  48073494 gaacctgtttgtgccacaccaaatccaga 48073466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 154 - 344
Target Start/End: Original strand, 36305696 - 36305882
Alignment:
Q  154 caaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaacacacgaggacatgtcgggcgacaacacccgtcttg 253  Q
    ||||||| |||||||| |||||||||||||| ||||||||||||||| | |||||||| |    ||||  ||||||| || |||||||||||| |||  |    
T  36305696 caaaagtgttacacaacaaaaagagatgttgagccgtttcaggatgatcgcaaccagcga----cacataaggacatatcaggcgacaacacctgtcgag 36305791  T
Q  254 caatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaaccttcaagagaacctttttgtgccacaccaa 344  Q
    |||||||||| |||||  ||||||| ||||| | || ||  |||||||| ||||| |||||||||||| |||||| ||||||||| |||||    
T  36305792 caatcaaattagtcttcattggtaaccgatccctgaggagtctccacgcaaaaactgaaaccttcaagggaacctgtttgtgccaaaccaa 36305882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 120 - 344
Target Start/End: Original strand, 36929044 - 36929265
Alignment:
Q  120 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 218  Q
    ||||||||||||  |||||| |||||| || |||| |||||| |||||||| |||||||||||||| ||| ||||||||||||| ||||||||     ||    
T  36929044 accaatccaatcacgcaccatatgccaaagcgaaccaaaagtgttacacaacaaaaagagatgttgagccatttcaggatgaccgcaaccagc----gac 36929139  T
Q  219 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaaccttc 318  Q
    |||  ||||||| || ||| ||||||| ||||  ||||||||||| ||||| |||||||| |||||   || ||  ||||| || ||||| |||||||||    
T  36929140 acataaggacatatcaggcaacaacactcgtcgagcaatcaaattagtcttcgttggtaaccgatccttgaggagtctccatgcaaaaactgaaaccttc 36929239  T
Q  319 aagagaacctttttgtgccacaccaa 344  Q
    ||| |||||| ||||||||| |||||    
T  36929240 aagggaacctgtttgtgccaaaccaa 36929265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 120 - 344
Target Start/End: Complemental strand, 48265981 - 48265760
Alignment:
Q  120 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 218  Q
    ||||||||||||  ||||||||||||| || |||| |||||| |||||||| ||||| |||| ||| |||||||| |||||||| |||| ||| |    |    
T  48265981 accaatccaatcacgcaccaaatgccaaagcgaaccaaaagtgttacacaacaaaaaaagatattgggccgtttctggatgaccgcaactagcga----c 48265886  T
Q  219 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaaccttc 318  Q
    |||  ||||||||||   ||| ||||||||||  ||||||||||| |||||||| |||||||||||  ||| ||  ||||| || |||||  ||| ||||    
T  48265885 acataaggacatgtcattcgataacacccgtcgagcaatcaaattagtctttgtcggtaaacgatcctggaggagtctccaagcaaaaactaaaatcttc 48265786  T
Q  319 aagagaacctttttgtgccacaccaa 344  Q
    ||| |||||| |||||||||||||||    
T  48265785 aagggaacctgtttgtgccacaccaa 48265760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 120 - 344
Target Start/End: Original strand, 21528038 - 21528259
Alignment:
Q  120 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 218  Q
    ||||||||||||  |||||| || ||| || |||| |||||| |||||||| |||||||||||||| |||||||| ||||||||  |||||||      |    
T  21528038 accaatccaatcacgcaccatataccaaagcgaaccaaaagtgttacacaacaaaaagagatgttgggccgtttccggatgaccgtaaccagc----ggc 21528133  T
Q  219 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaaccttc 318  Q
    |||  ||||||||||   ||| |||||||| |  ||||||||||| |||||||| |||||||||||  |||  |  ||||| || ||||| |||| ||||    
T  21528134 acataaggacatgtcattcgataacacccgacgagcaatcaaattagtctttgtcggtaaacgatcttggagtagtctccaagcaaaaactgaaatcttc 21528233  T
Q  319 aagagaacctttttgtgccacaccaa 344  Q
    ||| |||||| |||||||||||||||    
T  21528234 aagggaacctgtttgtgccacaccaa 21528259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 38231452 - 38231510
Alignment:
Q  19 cacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaa 77  Q
    ||||||||| ||| || |||||||||||||||||||||||||||||| |||||||||||    
T  38231452 cacatagaagtcatattagttgcataaaagaacgtctagcaacaccaccacctgtcaaa 38231510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 3692392 - 3692453
Alignment:
Q  19 cacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatga 80  Q
    |||||||||  || || |||||||||||||||||||||||| ||||| ||||||||||||||    
T  3692392 cacatagaagccatattagttgcataaaagaacgtctagcagcaccaccacctgtcaaatga 3692453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 36305563 - 36305608
Alignment:
Q  33 ataagttgcataaaagaacgtctagcaacaccatcacctgtcaaat 78  Q
    ||||||||||||||||||||||||| |||| || ||||||||||||    
T  36305563 ataagttgcataaaagaacgtctagaaacagcaccacctgtcaaat 36305608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 36928946 - 36928991
Alignment:
Q  33 ataagttgcataaaagaacgtctagcaacaccatcacctgtcaaat 78  Q
    ||||||||||||||||||||||||| |||| || ||||||||||||    
T  36928946 ataagttgcataaaagaacgtctagaaacagcaccacctgtcaaat 36928991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 32353655 - 32353611
Alignment:
Q  36 agttgcataaaagaacgtctagcaacaccatcacctgtcaaatga 80  Q
    |||||||||||||||||||||||| ||||| ||||| ||||||||    
T  32353655 agttgcataaaagaacgtctagcagcaccaccacctatcaaatga 32353611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 21527940 - 21527995
Alignment:
Q  33 ataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactg 88  Q
    |||||||||||||||||||||||||    | || ||||||||||||||||||||||    
T  21527940 ataagttgcataaaagaacgtctagacttagcaccacctgtcaaatgaataaactg 21527995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 48073790 - 48073738
Alignment:
Q  36 agttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactg 88  Q
    ||||||||||||||||||||| || ||||| ||||| |||||||| | |||||    
T  48073790 agttgcataaaagaacgtctaacagcaccaccacctatcaaatgagtgaactg 48073738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 148; Significance: 9e-78; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 120 - 359
Target Start/End: Complemental strand, 8487244 - 8487008
Alignment:
Q  120 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 218  Q
    ||||||||||||| ||||||||| ||||||||||| |||||||| |||||||||||| |||||  |||||| |||||||||||||||||||||||    |    
T  8487244 accaatccaatctcgcaccaaataccacagagaaccaaaagtatcacacaataaaaatagatggcgtgccgattcaggatgaccacaaccagcaa----c 8487149  T
Q  219 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaaccttc 318  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||| ||||||||| ||||| |||||||||    
T  8487148 acacgaggacatgtcaggcgacaacacccgtctagcaatcaaatttgtccttgttggttaacgatcacggatgagcctccacgcaaaaacagaaaccttc 8487049  T
Q  319 aagagaacctttttgtgccacaccaaatccagagcatagtc 359  Q
    ||| |||||| |||||||||||||||||||| |||||||||    
T  8487048 aagggaacctgtttgtgccacaccaaatccatagcatagtc 8487008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 120 - 359
Target Start/End: Original strand, 20674899 - 20675135
Alignment:
Q  120 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 218  Q
    ||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||| |||||| |||||| |||||||||||||||||||||||    |    
T  20674899 accaatccaatctcgcaccaaatgccacagagaaccaaaagtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaa----c 20674994  T
Q  219 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaaccttc 318  Q
    |||||| |||||||| ||||| | ||||| ||| ||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||| ||||||||    
T  20674995 acacgaagacatgtcaggcgaaagcacccatctagcaatcaaatttgtccttgttggtaaacgatcacggatgagcctccacgcaaaaacgaaaaccttc 20675094  T
Q  319 aagagaacctttttgtgccacaccaaatccagagcatagtc 359  Q
    ||| |||||| ||||||||||| |||||||| |||||||||    
T  20675095 aagggaacctgtttgtgccacaacaaatccatagcatagtc 20675135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 120 - 356
Target Start/End: Original strand, 2631275 - 2631508
Alignment:
Q  120 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 218  Q
    |||||||||| || ||||||||||||||||||||| |||||||| |||||||||||| |||||| ||||||  |||||||||||||| ||| |||    |    
T  2631275 accaatccaagctcgcaccaaatgccacagagaaccaaaagtatcacacaataaaaatagatgtcgtgccgactcaggatgaccacatccaccaa----c 2631370  T
Q  219 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaaccttc 318  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| || || |||| | |||||||||||||||    
T  2631371 acacgaggacatgtctggcgacaacacccgtctagcaatcaaatttgtccttgttggtaaacgatcacggaggagccgccacacaaaaacggaaaccttc 2631470  T
Q  319 aagagaacctttttgtgccacaccaaatccagagcata 356  Q
    ||| |||||| ||||||||||||||||| |||||||||    
T  2631471 aagggaacctgtttgtgccacaccaaattcagagcata 2631508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 124 - 351
Target Start/End: Complemental strand, 23873735 - 23873511
Alignment:
Q  124 atccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaacacac 222  Q
    ||||||||  ||||||||||||||||||||| |||||||| |||||||||||| |||||  | |||| |||||||||||| ||||||||||    |||||    
T  23873735 atccaatcacgcaccaaatgccacagagaaccaaaagtatcacacaataaaaatagatgacgagccgattcaggatgaccgcaaccagcaa----cacac 23873640  T
Q  223 gaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaaccttcaaga 322  Q
    || |||||||| | ||||||||||||||  ||||||||||||||| ||||||||||||||||||||| || ||||||||| ||||||||||||||||||     
T  23873639 gaagacatgtcagacgacaacacccgtcgagcaatcaaatttgtccttgttggtaaacgatcacggaggagcctccacgcaaaaacggaaaccttcaagg 23873540  T
Q  323 gaacctttttgtgccacaccaaatccaga 351  Q
    |||||| ||||||||||||||||||||||    
T  23873539 gaacctgtttgtgccacaccaaatccaga 23873511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 124 - 351
Target Start/End: Original strand, 55298501 - 55298725
Alignment:
Q  124 atccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaacacac 222  Q
    ||||||||  ||||||||||||||||||||| |||||||| |||||||||||| |||||| | |||| |||||||||||| || |||||||    |||||    
T  55298501 atccaatcacgcaccaaatgccacagagaaccaaaagtatcacacaataaaaatagatgtcgagccgattcaggatgaccgcagccagcaa----cacac 55298596  T
Q  223 gaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaaccttcaaga 322  Q
    || |||||||| | ||||||||||||||  ||||||||||||||| ||||||||||||||||||||| || ||||||||| ||||||||||||||||||     
T  55298597 gaagacatgtcagacgacaacacccgtcgagcaatcaaatttgtccttgttggtaaacgatcacggaggagcctccacgcaaaaacggaaaccttcaagg 55298696  T
Q  323 gaacctttttgtgccacaccaaatccaga 351  Q
    |||||| ||||||||||||||||||||||    
T  55298697 gaacctgtttgtgccacaccaaatccaga 55298725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 120 - 344
Target Start/End: Complemental strand, 3130242 - 3130021
Alignment:
Q  120 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 218  Q
    ||||||||||||  |||||| |||||| || |||| |||||| |||||||| |||||||||||||| |||||||| |||||||| ||||||||     ||    
T  3130242 accaatccaatcacgcaccatatgccaaagcgaaccaaaagtgttacacaacaaaaagagatgttgggccgtttctggatgaccgcaaccagc----tac 3130147  T
Q  219 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaaccttc 318  Q
    |||  | ||||||||   ||| ||||||||||  ||||||||||| |||||||| ||||||||||| |||| ||  ||||| || ||||| |||| ||||    
T  3130146 acataaagacatgtcattcgataacacccgtcgagcaatcaaattagtctttgtcggtaaacgatctcggaggagtctccaagcaaaaactgaaatcttc 3130047  T
Q  319 aagagaacctttttgtgccacaccaa 344  Q
    ||| |||||| |||||| ||||||||    
T  3130046 aagggaacctgtttgtgtcacaccaa 3130021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 120 - 348
Target Start/End: Complemental strand, 7663501 - 7663277
Alignment:
Q  120 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 218  Q
    ||||||||||||  ||||||||||||| || |||| |||||| || ||||| ||||| | |||||| |||| |||||||||||| |||||||| |    |    
T  7663501 accaatccaatcacgcaccaaatgccaaagcgaaccaaaagtgttgcacaaaaaaaaaa-atgttgagccgattcaggatgaccgcaaccagcga----c 7663407  T
Q  219 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaaccttc 318  Q
    |||  ||||||| || | || |||||||| ||  |||||||| || ||||| |||||||||||||| |||||||  |||||||| ||||| || ||||||    
T  7663406 acataaggacatatcagtcggcaacacccttcgagcaatcaagttagtcttcgttggtaaacgatctcggatgagtctccacgcaaaaactgataccttc 7663307  T
Q  319 aagagaacctttttgtgccacaccaaatcc 348  Q
    |||  ||||| |||||||||||||||||||    
T  7663306 aaggaaacctgtttgtgccacaccaaatcc 7663277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 120 - 343
Target Start/End: Complemental strand, 8655336 - 8655116
Alignment:
Q  120 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 218  Q
    ||||||||||||  |||||| |||||| || |||| |||||| |||||| |||||||||||||||| ||||||||  ||||||||||||||||     ||    
T  8655336 accaatccaatcacgcaccatatgccaaagcgaaccaaaagtgttacacgataaaaagagatgttgagccgtttccagatgaccacaaccagc----gac 8655241  T
Q  219 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaaccttc 318  Q
    |||  |||||||||   |||| |||||||| |  |||||||||||  ||||||||||||| |||||  ||| ||  ||||| || ||||| |||| ||||    
T  8655240 acataaggacatgtgatgcgataacacccgacgagcaatcaaattaatctttgttggtaaccgatcctggaggagtctccaagcaaaaactgaaatcttc 8655141  T
Q  319 aagagaacctttttgtgccacacca 343  Q
    ||| ||||||  |||||||||||||    
T  8655140 aagggaacctgattgtgccacacca 8655116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 120 - 344
Target Start/End: Original strand, 47540802 - 47541023
Alignment:
Q  120 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 218  Q
    |||||||||| |  |||||| |||||| || |||| |||||| |||||||| || || |||||||| |||||||| |||||||| || ||||| |    |    
T  47540802 accaatccaaccacgcaccatatgccaaagcgaaccaaaagtgttacacaacaagaatagatgttgggccgtttccggatgaccgcatccagcga----c 47540897  T
Q  219 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaaccttc 318  Q
    |||  ||||||||||   ||| ||||||||||  ||||||||||| ||||| ||  ||||||||||  ||| ||| ||| | || ||||| |||| ||||    
T  47540898 acataaggacatgtcattcgataacacccgtcgagcaatcaaattagtcttcgtcagtaaacgatcctggaggaatctcaatgcaaaaactgaaatcttc 47540997  T
Q  319 aagagaacctttttgtgccacaccaa 344  Q
    ||| |||||| |||||||||||||||    
T  47540998 aagggaacctgtttgtgccacaccaa 47541023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 78
Target Start/End: Complemental strand, 8487339 - 8487297
Alignment:
Q  36 agttgcataaaagaacgtctagcaacaccatcacctgtcaaat 78  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  8487339 agttgcataaaagaacgtctagcaacaccaccacctgtcaaat 8487297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 2631163 - 2631224
Alignment:
Q  19 cacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatga 80  Q
    |||||||||  || || |||||||||||||||||||||||| ||||| ||||||||||||||    
T  2631163 cacatagaagccatattagttgcataaaagaacgtctagcagcaccaccacctgtcaaatga 2631224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 120 - 202
Target Start/End: Original strand, 23279484 - 23279567
Alignment:
Q  120 accaatccaatcttgcaccaaatgccacagagaaca-aaagtattacacaataaaaagagatgttgtgccgtttcaggatgacc 202  Q
    ||||||||||||  |||||| |||||| || ||||  ||||  ||||||||||||||||||||||||| ||||||||| |||||    
T  23279484 accaatccaatcacgcaccatatgccaaagcgaacttaaagagttacacaataaaaagagatgttgtgtcgtttcaggttgacc 23279567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 20673474 - 20673532
Alignment:
Q  19 cacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaa 77  Q
    |||||||||  || || |||||||||||||||||||||||||||||| || ||||||||    
T  20673474 cacatagaagccatattagttgcataaaagaacgtctagcaacaccaccaactgtcaaa 20673532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 7663599 - 7663554
Alignment:
Q  33 ataagttgcataaaagaacgtctagcaacaccatcacctgtcaaat 78  Q
    ||||||||||||||||||||||||| ||||  | ||||||||||||    
T  7663599 ataagttgcataaaagaacgtctagaaacaaaaccacctgtcaaat 7663554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 23873834 - 23873782
Alignment:
Q  36 agttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactg 88  Q
    |||||||||||||||||||||||| ||||  ||||| |||||||| | |||||    
T  23873834 agttgcataaaagaacgtctagcagcacctccacctatcaaatgagtgaactg 23873782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 120 - 348
Target Start/End: Original strand, 7552 - 7777
Alignment:
Q  120 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 218  Q
    ||||||||||||  ||||||||||||| || |||| |||||| || ||||| ||||| | |||||| |||| |||||||||||| |||||||| |    |    
T  7552 accaatccaatcacgcaccaaatgccaaagcgaaccaaaagtgttgcacaaaaaaaaaaaatgttgagccgattcaggatgaccgcaaccagcga----c 7647  T
Q  219 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaaccttc 318  Q
    |||  ||||||| || | || |||||||| ||  |||||||| || ||||| |||||||||||||| |||||||  |||||||| ||||| || ||||||    
T  7648 acataaggacatatcagtcggcaacacccttcgagcaatcaagttagtcttcgttggtaaacgatctcggatgagtctccacgcaaaaactgataccttc 7747  T
Q  319 aagagaacctttttgtgccacaccaaatcc 348  Q
    |||  ||||| |||||||||||||||||||    
T  7748 aaggaaacctgtttgtgccacaccaaatcc 7777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 7454 - 7499
Alignment:
Q  33 ataagttgcataaaagaacgtctagcaacaccatcacctgtcaaat 78  Q
    ||||||||||||||||||||||||| ||||  | ||||||||||||    
T  7454 ataagttgcataaaagaacgtctagaaacaaaaccacctgtcaaat 7499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 120 - 211
Target Start/End: Complemental strand, 134899 - 134807
Alignment:
Q  120 accaatccaatcttgcaccaaatgccacagagaacaaaa-gtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagc 211  Q
    ||||||||||||  |||||| |||||| || |||| ||| || ||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  134899 accaatccaatcacgcaccatatgccaaagcgaaccaaacgtgttacacaataaaaagagatgttgagccgtttccggatgaccacaaccagc 134807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 120 - 211
Target Start/End: Complemental strand, 312726 - 312634
Alignment:
Q  120 accaatccaatcttgcaccaaatgccacagagaacaaaa-gtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagc 211  Q
    ||||||||||||  |||||| |||||| || |||| ||| || ||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  312726 accaatccaatcacgcaccatatgccaaagcgaaccaaacgtgttacacaataaaaagagatgttgagccgtttccggatgaccacaaccagc 312634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 120 - 211
Target Start/End: Complemental strand, 328180 - 328088
Alignment:
Q  120 accaatccaatcttgcaccaaatgccacagagaacaaaa-gtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagc 211  Q
    ||||||||||||  |||||| |||||| || |||| ||| || ||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  328180 accaatccaatcacgcaccatatgccaaagcgaaccaaacgtgttacacaataaaaagagatgttgagccgtttccggatgaccacaaccagc 328088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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