View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2962_high_5 (Length: 324)
Name: NF2962_high_5
Description: NF2962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2962_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 12 - 308
Target Start/End: Original strand, 38486399 - 38486695
Alignment:
| Q |
12 |
atgaaccaggacaactactttgaggaggcacttaaagtacgaaatctcttggaagaattcaagcattactatggtattcgaaaaccaactattttgggag |
111 |
Q |
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| T |
38486399 |
atgaaccaggacaactactttgaggaggcacttaaagtacgaaatctcttggaagaattcaagcattactatggtattcgaaaaccaactattttgggag |
38486498 |
T |
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| Q |
112 |
tgagggaacatatatttacaggtttcgtttcctctcttgcttggttcatgtcagctcaggaatcaagttttgtcaccttagggcagagggttttggcaaa |
211 |
Q |
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| T |
38486499 |
tgagggaacatatatttacaggtttcgtttcttctcttgcttggtttatgtcagctcaggaatcaagttttgtcaccttagggcagagggttttggcaaa |
38486598 |
T |
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| Q |
212 |
ccctttgaaaattcgaatgcattatggccatcctgatgtgtttgacaggttttggtttataactagaggtggtatcagtaaagcttctagagtgatc |
308 |
Q |
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| T |
38486599 |
ccctttgaaaattcgaatgcattatggccatcctgatgtgtttgacaggttttggtttataactagaggtggtatcagtaaagcttctagagtgatc |
38486695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 268
Target Start/End: Original strand, 3685739 - 3685886
Alignment:
| Q |
121 |
atatatttacaggtttcgtttcctctcttgcttggttcatgtcagctcaggaatcaagttttgtcaccttagggcagagggttttggcaaaccctttgaa |
220 |
Q |
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| T |
3685739 |
atatattcacaggctctgtttcgtcgcttgcttggttcatgtcatcccaagagacaagttttgtgacactgggccagcgatttctggcaaaccctttgaa |
3685838 |
T |
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| Q |
221 |
aattcgaatgcattatggccatcctgatgtgtttgacaggttttggtt |
268 |
Q |
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| T |
3685839 |
agtacggatgcactacggtcatccggatgtgtttgacagattttggtt |
3685886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 12 - 308
Target Start/End: Original strand, 30120798 - 30121094
Alignment:
| Q |
12 |
atgaaccaggacaactactttgaggaggcacttaaagtacgaaatctcttggaagaattcaagcattactatggtattcgaaaaccaactattttgggag |
111 |
Q |
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||||| ||||| |||||||||||||| ||||| || | |||||||| | ||||| | | | |||||| ||| | || |||||||| ||||| || | |
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| T |
30120798 |
atgaatcaggataactactttgaggaagcactcaagatgagaaatctccttgaagagtatagacgttactacggtgtccggaaaccaacaattttaggtg |
30120897 |
T |
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| Q |
112 |
tgagggaacatatatttacaggtttcgtttcctctcttgcttggttcatgtcagctcaggaatcaagttttgtcaccttagggcagagggttttggcaaa |
211 |
Q |
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| T |
30120898 |
tcagggaacacattttcactggctccgtgtcctctcttgcctggttcatgtcagcccaggagacaagtttcgtcaccctaggacagagggttttggcaaa |
30120997 |
T |
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| Q |
212 |
ccctttgaaaattcgaatgcattatggccatcctgatgtgtttgacaggttttggtttataactagaggtggtatcagtaaagcttctagagtgatc |
308 |
Q |
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||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||||| |||||||| ||||||||| |
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| T |
30120998 |
tcctttgaaagttcgaatgcattatggtcatccagatgtgtttgacaggttttggttcttaactcgaggtggtatcagcaaagcttccagagtgatc |
30121094 |
T |
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