View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2962_high_6 (Length: 281)
Name: NF2962_high_6
Description: NF2962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2962_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 29176157 - 29176405
Alignment:
| Q |
18 |
tgatagttgttaacggtgaccaatgatgtattacaaaatatcaagttaatttaatttccaattaagggccagaacttgacttttgatttagtatcttgaa |
117 |
Q |
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| T |
29176157 |
tgatagttgttaacggtgaccaatgatgtattacaaaatatcaagttaatttaatttccaattaagggccagaacttgacttttgattaagtatcttgaa |
29176256 |
T |
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| Q |
118 |
aatatgtcatattagaagagtccataatatttttgatccttgaacaatggttacatctatgactagctgcttaattcatgcatattgataaatgaaagag |
217 |
Q |
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| T |
29176257 |
aatatgtcatattagaagagtccataata-ttttgatccttgaacaatggttacatctatgattagctgcttaattcatgcatattgataaatgaaagag |
29176355 |
T |
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| Q |
218 |
cctaatgaaaacctatgaagcacgaacacttattggattaggcgtgtttc |
267 |
Q |
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| T |
29176356 |
cctaaagaaaacctatgaagcatgaacacttctcggattaggcgtgtttc |
29176405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 265
Target Start/End: Original strand, 4017726 - 4017764
Alignment:
| Q |
227 |
aacctatgaagcacgaacacttattggattaggcgtgtt |
265 |
Q |
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| T |
4017726 |
aacctatgaagcacgaacactttttagattaggcgtgtt |
4017764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 267
Target Start/End: Original strand, 6898220 - 6898258
Alignment:
| Q |
229 |
cctatgaagcacgaacacttattggattaggcgtgtttc |
267 |
Q |
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| T |
6898220 |
cctatgaagcacgaacactcatcggattaggcgtgtttc |
6898258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 264
Target Start/End: Complemental strand, 20633592 - 20633556
Alignment:
| Q |
228 |
acctatgaagcacgaacacttattggattaggcgtgt |
264 |
Q |
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| T |
20633592 |
acctatgaagcacgaacactccttggattaggcgtgt |
20633556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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