View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2962_low_10 (Length: 241)
Name: NF2962_low_10
Description: NF2962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2962_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 35364437 - 35364658
Alignment:
| Q |
1 |
atggccaggacagtgctaagattcatagggtacatatactcattggagccattcatgatttgttggactatgattctgcaagctttttcagatggatgga |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35364437 |
atggccagaacagtgctaagattcatagggtacatatactcattggagccattcaagatttgttggactatgattctgcaagctttttcagatggatgga |
35364536 |
T |
|
| Q |
101 |
ttgaatcccaaaatgcatagaggtctcgattttggcacaagtttgcaagaggtgtgcataatttaatcccattgtatgggccatactcacaacaagcttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35364537 |
ttgaatcccaaaatgcatagaggtctcgattttggcacaagtttgcaagaggtgtgcataatttaatcccattgtatgggccatactcacaacaagcttt |
35364636 |
T |
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| Q |
201 |
ctttgatgtaacaaatcctgtt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
35364637 |
ctttgatgtaacaaatcctgtt |
35364658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 35376201 - 35376422
Alignment:
| Q |
1 |
atggccaggacagtgctaagattcatagggtacatatactcattggagccattcatgatttgttggactatgattctgcaagctttttcagatggatgga |
100 |
Q |
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||||| || |||||||| ||||||||||||||||||||||||||||||||| ||| ||| ||||| ||||||||||||| |||||||||||||||||||| |
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| T |
35376201 |
atggcgagaacagtgcttagattcatagggtacatatactcattggagccagtcaagatctgttgcactatgattctgctagctttttcagatggatgga |
35376300 |
T |
|
| Q |
101 |
ttgaatcccaaaatgcatagaggtctcgattttggcacaagtttgcaagaggtgtgcataatttaatcccattgtatgggccatactcacaacaagcttt |
200 |
Q |
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| T |
35376301 |
atggatcccaaaatgcataaaggtctcgattttggcacaagtttgaaaggggtgtgcatagtccaatcccattgtaagggccttgtccacaacaagctat |
35376400 |
T |
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| Q |
201 |
ctttgatgtaacaaatcctgtt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
35376401 |
ctttgatgtaacaaatcctgtt |
35376422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 35357646 - 35357867
Alignment:
| Q |
1 |
atggccaggacagtgctaagattcatagggtacatatactcattggagccattcatgatttgttggactatgattctgcaagctttttcagatggatgga |
100 |
Q |
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||||| || |||||||||||||||||||||| ||||||| ||||| ||| | | || ||||||||||||||||||| |||||||||||||||||| | |
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| T |
35357646 |
atggcgagaacagtgctaagattcatagggttcatatacaggttggatccaatgaacatctgttggactatgattctgctagctttttcagatggatgaa |
35357745 |
T |
|
| Q |
101 |
ttgaatcccaaaatgcatagaggtctcgattttggcacaagtttgcaagaggtgtgcataatttaatcccattgtatgggccatactcacaacaagcttt |
200 |
Q |
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|| ||||||||||||||| |||| ||||||| ||||||| |||| || |||||| || | | |||||| ||| || | || | |||||||||| | |
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| T |
35357746 |
atgcatcccaaaatgcataaaggtttcgatttgggcacaattttgaaataggtgtacacagtccaatcccgttgaatcgcccttgaccacaacaagcatc |
35357845 |
T |
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| Q |
201 |
ctttgatgtaacaaatcctgtt |
222 |
Q |
| |
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||||| |||||||||||||||| |
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| T |
35357846 |
ctttgctgtaacaaatcctgtt |
35357867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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