View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2962_low_11 (Length: 237)
Name: NF2962_low_11
Description: NF2962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2962_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 3015278 - 3015499
Alignment:
| Q |
1 |
tgaagatactattgagaatttgatatcaagtggagaaagtgaaacttttatgcaaagagcaattcaagaacaaggtaggggtcagattatggacacaata |
100 |
Q |
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| T |
3015278 |
tgaagatactattgagaatttgatatcaagtggagaaagtgaaacttttatgcaaagagcaattcaagaacaaggtaggggtcagattatggacacaata |
3015377 |
T |
|
| Q |
101 |
tctgagattcaagaaagacatgatgctgttaaggaaatagagaaaaacttgattgagttgcatcaagtatttttggacatggcagcacttgttgagtcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3015378 |
tctgagattcaagaaagacatgatgctgttaaggaaatagagaaaaacttgattgagttgcatcaagtatttttggacatggcagcacttgttgagtcac |
3015477 |
T |
|
| Q |
201 |
aaggacaacaattgaataacat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
3015478 |
aaggacaacaattgaataacat |
3015499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 35955859 - 35955649
Alignment:
| Q |
1 |
tgaagatactattgagaatttgatatcaagtggagaaagtgaaacttttatgcaaagagcaattcaagaacaaggtaggggtcagattatggacacaata |
100 |
Q |
| |
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|||||| ||||| || |||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||| || ||||| || || |
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| T |
35955859 |
tgaagaaactatagaaaatttgatatcaagtggagaaagtgaaaatttcatgcaaagggcaattcaagaacaaggtaggggtcaaataatggatactatt |
35955760 |
T |
|
| Q |
101 |
tctgagattcaagaaagacatgatgctgttaaggaaatagagaaaaacttgattgagttgcatcaagtatttttggacatggcagcacttgttgagtcac |
200 |
Q |
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|| || |||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||| |||||||| |||||| | | || ||||| | |
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| T |
35955759 |
tcggaaattcaagaaagacatgatgctgttaaggaaattgagaagaatttgattgagttgcatcaagtgtttttggatatggcaactttggtagagtctc |
35955660 |
T |
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| Q |
201 |
aaggacaacaa |
211 |
Q |
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||||||||||| |
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| T |
35955659 |
aaggacaacaa |
35955649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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