View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2962_low_2 (Length: 459)
Name: NF2962_low_2
Description: NF2962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2962_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 181 - 441
Target Start/End: Original strand, 30905311 - 30905573
Alignment:
| Q |
181 |
tggcaaaggttttaaatgtttatctaattaacgaaatatatattatactttgatatctta----gtttcatctcttaaatacaacaggtgatttagctct |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
30905311 |
tggcaaaggttttaaatgtttatctaattaacgaaatatat--tatactttgatatcttaattagtttcatctcttaaatacaacaggtgatttagctct |
30905408 |
T |
|
| Q |
277 |
gaaatatttggaatattacgtgggaatcccaaagtaactgaatgtatccccaaaatcccatgtaacagaaaattattttaaccctatatagtatatactc |
376 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30905409 |
gaaatatttggaatattacatgggaatcccaaagtaactgaatgtatcaccaaaatcccatgtaacagaaaattattttaaccctatatagtatatactc |
30905508 |
T |
|
| Q |
377 |
ttgtttatctgaaataattataatcccttgaggaaaaagtatatatatagaattagaaagagtac |
441 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30905509 |
ttgtttatctgaaataattataatcccttgaggaaaaagtatatatatagaattagaaagagtac |
30905573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 30905193 - 30905311
Alignment:
| Q |
9 |
agcacagacgctttagattttgatggtgttttcgatgtctgatacatgtcagtgtctgtcgcctacgctacacttacattcaatatatgatagtactatt |
108 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
30905193 |
agcaccgacgctttagatta--atggtgttttcgatgtctgatatatgtcagtgtctgtcgcctatgctacacttacattcaatatatggtagtactatt |
30905290 |
T |
|
| Q |
109 |
ttcttaaattaatacttgtgt |
129 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
30905291 |
ttcttaaattaatacttgtgt |
30905311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University