View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2962_low_3 (Length: 352)
Name: NF2962_low_3
Description: NF2962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2962_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 16 - 336
Target Start/End: Original strand, 37086412 - 37086734
Alignment:
| Q |
16 |
agttaggatccaaattaggaatgcaaaatgccctcactttcaaaagctagtcctcatttaacacgtaccacacaatcatagcctatataattccaaatca |
115 |
Q |
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| T |
37086412 |
agttaggatccaaattaggaatgcaaaatgccctcactttcaaaagctagtcctcatttaacacgtaccacacaatcatagcctatataattccaaatca |
37086511 |
T |
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| Q |
116 |
tggggaacacaaatttgtacattcagcattttgggccacataacataacaagtggacctattacaaggtagttaaatgccaaagcatatcatac--nnnn |
213 |
Q |
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| T |
37086512 |
tggggaacacaaatttgtacattcagcattttgggccacataacataacaagtggacctattacaaggtagttaaatgccaaagcatatcatacaaaaaa |
37086611 |
T |
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| Q |
214 |
nnnnncaactctatcatttcaaatcttattcttctaccttatattcttccaggccactagtattttgttgctgaaacacttacacattatctccaacaga |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37086612 |
aaaaacaactctatcatttcaaatcttattcttctaccttatattcttccaggccactagtattttgttgctgaaacacttacacattatctccaacaga |
37086711 |
T |
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| Q |
314 |
acatacaacatggtatccatttc |
336 |
Q |
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|||||||||||||||| |||||| |
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| T |
37086712 |
acatacaacatggtattcatttc |
37086734 |
T |
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