View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2962_low_8 (Length: 250)
Name: NF2962_low_8
Description: NF2962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2962_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 3015090 - 3014852
Alignment:
| Q |
1 |
tcgcggcattcgaacgttctaatgcttcaagcttacccttaatgattttgactcttttgagaacctgttcaacatctttatccatccttgctctaagatc |
100 |
Q |
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| T |
3015090 |
tcgcggcattcgaacgttctaatgcttcaagcttacccttaatgattttgactcttttgagaacctgttcaacatctttatccatccttgctctaagatc |
3014991 |
T |
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| Q |
101 |
tttcattgttttagcattgtggacaattttgctttcttcatttgcctcttgtaattttctataaagcttttcgacaagcctcatgtcttctttcacattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3014990 |
tttcattgttttagcattgtggacaattttgctttcttcatttgcctcttgtaattttctataaagcttttcgacaagcctcatgtcttctttcacattc |
3014891 |
T |
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| Q |
201 |
tcaacatcctcaaagaatttatcaaggttgatactctct |
239 |
Q |
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| T |
3014890 |
tcaacatcctcaaagaatttatcaaggttgatactctct |
3014852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 163
Target Start/End: Original strand, 35956052 - 35956209
Alignment:
| Q |
6 |
gcattcgaacgttctaatgcttcaagcttacccttaatgattttgactcttttgagaacctgttcaacatctttatccatccttgctctaagatctttca |
105 |
Q |
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||||| ||||| || |||||||| || || || ||||| |||||||| | ||| || || |||||||||||||| ||||| | ||||| ||| ||||||| |
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| T |
35956052 |
gcatttgaacgatccaatgcttcgagttttcctttaataattttgacacgtttaaggacttgttcaacatctttgtccattcgtgctcgaagttctttca |
35956151 |
T |
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| Q |
106 |
ttgttttagcattgtggacaattttgctttcttcatttgcctcttgtaattttctata |
163 |
Q |
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| |||||||||||||| || |||| ||||||||||| ||||||| ||||| ||||| |
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| T |
35956152 |
tggttttagcattgtgcacggttttactttcttcattagcctctttcaatttcctata |
35956209 |
T |
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