View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2963_high_13 (Length: 237)
Name: NF2963_high_13
Description: NF2963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2963_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 44692202 - 44691982
Alignment:
| Q |
3 |
atttcaccttagctgattatttttataagctttcaccttagttgatacatatttttaaacaggtaattgcatgtttattgctaagcagggttacgcttta |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44692202 |
atttcaccttagctgattatttttataagctttcaccttagttgatacatatttttaaacaggtaattgcatgtttattgctaagcagggttacgcttta |
44692103 |
T |
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| Q |
103 |
taccatcaaaaacataagcttgaatctggccccttgtgttgctaagtttgtaaaatgcatcgtttgccttgtttgccaaggcacggtattgaatagaagt |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44692102 |
taccatcaaaaacataagcttgaatctggccccttgtgttgctaagtttgtaaaatgcatcgtttgccttgtttgccaaggcacggtattgaatagaagc |
44692003 |
T |
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| Q |
203 |
aacaacattgacaaagacatt |
223 |
Q |
| |
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||||||||||||||||||||| |
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| T |
44692002 |
aacaacattgacaaagacatt |
44691982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 78 - 223
Target Start/End: Complemental strand, 44631984 - 44631839
Alignment:
| Q |
78 |
tattgctaagcagggttacgctttataccatcaaaaacataagcttgaatctggccccttgtgttgctaagtttgtaaaatgcatcgtttgccttgtttg |
177 |
Q |
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|||| ||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || || ||||||| || |
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| T |
44631984 |
tatttctaagcagggttatggtttataccatcaaaaacataagcttgaatttggccccttgtgttgctaagtttgtaaaatgcctcattagccttgtctg |
44631885 |
T |
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| Q |
178 |
ccaaggcacggtattgaatagaagtaacaacattgacaaagacatt |
223 |
Q |
| |
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|||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
44631884 |
ccaaggcacggtattgaatagaagcaacaacgttgacaaagacatt |
44631839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 78 - 223
Target Start/End: Original strand, 44636917 - 44637062
Alignment:
| Q |
78 |
tattgctaagcagggttacgctttataccatcaaaaacataagcttgaatctggccccttgtgttgctaagtttgtaaaatgcatcgtttgccttgtttg |
177 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| || || |||| || |
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| T |
44636917 |
tattgctaagcagggttacagtttataccatcaaaaacataagcttgaatctgggaccttgtgttactaagtttgtaaaatgcatcattggcgttgtctg |
44637016 |
T |
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| Q |
178 |
ccaaggcacggtattgaatagaagtaacaacattgacaaagacatt |
223 |
Q |
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|||||||||||||||||||||||| ||| || || ||||||||||| |
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| T |
44637017 |
ccaaggcacggtattgaatagaagcaacgacgttcacaaagacatt |
44637062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 99 - 223
Target Start/End: Complemental strand, 44682438 - 44682314
Alignment:
| Q |
99 |
tttataccatcaaaaacataagcttgaatctggccccttgtgttgctaagtttgtaaaatgcatcgtttgccttgtttgccaaggcacggtattgaatag |
198 |
Q |
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||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||| |
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| T |
44682438 |
tttataccatcaaaaacataagcttgaatttggtttcttgtgttgctaagtttgtaaaatgcatcattagccttgtctgccaaggcacggtattgaatag |
44682339 |
T |
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| Q |
199 |
aagtaacaacattgacaaagacatt |
223 |
Q |
| |
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||| ||||||||||||||||||||| |
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|
| T |
44682338 |
aagcaacaacattgacaaagacatt |
44682314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 99 - 220
Target Start/End: Complemental strand, 44653429 - 44653308
Alignment:
| Q |
99 |
tttataccatcaaaaacataagcttgaatctggccccttgtgttgctaagtttgtaaaatgcatcgtttgccttgtttgccaaggcacggtattgaatag |
198 |
Q |
| |
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||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| || ||||||| ||||||||| ||||||||||||| |
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| T |
44653429 |
tttataccatcaaaaacataagcttgaatttggtttcttgtgttgctaagtttgtaaaatgcatcattcgccttgtctgccaaggcccggtattgaatag |
44653330 |
T |
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| Q |
199 |
aagtaacaacattgacaaagac |
220 |
Q |
| |
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||| |||||||||||||||||| |
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| T |
44653329 |
aagcaacaacattgacaaagac |
44653308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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