View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2963_high_5 (Length: 372)
Name: NF2963_high_5
Description: NF2963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2963_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 9 - 356
Target Start/End: Original strand, 1996221 - 1996568
Alignment:
| Q |
9 |
atcataggatccaaatatgtttagggttttgtatttgatgagtttccttaaccatataacaagnnnnnnnnaaggatctcccttgtgtaacttaaatgaa |
108 |
Q |
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| T |
1996221 |
atcataggatccaaatatgtttagggttttgtatttgatgagtttccttaaccatataacaagttttttttaaggatctcccttgtgtaacttaaatgaa |
1996320 |
T |
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| Q |
109 |
aaatctttcaatgtctaacaagtaatgttttagaaaccgaatcgaacattgaactggtagatatttgagtcatggttcaatgacaataaatcactcgtac |
208 |
Q |
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| T |
1996321 |
aaatctttcaatgtctaacaagtaatgttttagaaaccgaatcgaacattgaactggtagatatttgagtcatggttcgatgacaataaatcactcgtac |
1996420 |
T |
|
| Q |
209 |
tgagaagaaattgcagccaaccgctcaaataattgaaccgtatatagtgttggtataaccttccagtccagttttataaacggttctgttatttgtgcgg |
308 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1996421 |
cgagatgaaattgcagccaaccgctcaaataattgaactgtatatagtgttggtataaccttccagtccacttttataaacggttctgttatttgtgcgg |
1996520 |
T |
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| Q |
309 |
ttggccgcaatttcatctcgttatttgaagatggaagaccactgatgt |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1996521 |
ttggccgcaatttcatctcgttatttgaagatggaagaccactgatgt |
1996568 |
T |
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