View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2963_low_10 (Length: 252)
Name: NF2963_low_10
Description: NF2963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2963_low_10 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 47686852 - 47686618
Alignment:
| Q |
19 |
gggaaacaataaaatgctcatgtttaatggtacaataaaactcagttaattatagaggaactagcttataaattgtgtgcatattttaagaaacaataaa |
118 |
Q |
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| T |
47686852 |
gggaaacaataaaatgctcatgtttaatggtacaataaaactcagttaattatagaggaactagcttataaattgtgtgcatattttaagaaacaataaa |
47686753 |
T |
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| Q |
119 |
aatgctnnnnnnn-ttgttttccttatttccagaaattatgtatcattcttaagtagcatttcatcttctaacaatcacaatgattcatttaaaaaatct |
217 |
Q |
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| T |
47686752 |
aatgctaaaaaaaattgttttccttatttccagaaattatgtatcattcttaagtagcatttcatcttctaacaatcacaatgattcatttaaaaaatct |
47686653 |
T |
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| Q |
218 |
cccaattttttattgagaggacatctcacattttt |
252 |
Q |
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| T |
47686652 |
cacaattttttatttagaggacatctcacattttt |
47686618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 47692825 - 47692767
Alignment:
| Q |
160 |
atcattcttaagtagcatttcatcttctaacaatcacaatgattcatttaaaaaatctc |
218 |
Q |
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| T |
47692825 |
atcattcttaagtagcatttcatcttttaatcatcaaaatgattcattttaaaaatctc |
47692767 |
T |
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