View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2963_low_13 (Length: 250)
Name: NF2963_low_13
Description: NF2963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2963_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 9 - 234
Target Start/End: Complemental strand, 32725029 - 32724804
Alignment:
| Q |
9 |
gagatgaagagatttaaagagaagaaaaaggatattgcaatgcaaatacatgagacacaacattcattttataaactcaagtgatgagaattcacaaatc |
108 |
Q |
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| T |
32725029 |
gagatgaagagatttaaagagaagaaaaaggatattgcaatgcaaatacatgagacacaacattcattttataaactcaagtgatgcgaattcacaaatc |
32724930 |
T |
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| Q |
109 |
gtataatgtctagacataagaaccatacttttttctctgaaccgtgaaatgctgagaaagaatcttttaacatccactaccttcaacccctttctaaaaa |
208 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
32724929 |
gtataatgtcttgacataagaaccatacttttttctctgaaccatgaaatgctgagaaagaatcttttaacatccattaccttcaacacctttctaaaaa |
32724830 |
T |
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| Q |
209 |
gcccgttaacccaaataacttgtgtc |
234 |
Q |
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||| ||||||||||||||||| |||| |
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| T |
32724829 |
gcctgttaacccaaataacttatgtc |
32724804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 70 - 230
Target Start/End: Complemental strand, 4002127 - 4001967
Alignment:
| Q |
70 |
attcattttataaactcaagtgatgagaattcacaaatcgtataatgtctagacataagaaccatacttttttctctgaaccgtgaaatgctgagaaaga |
169 |
Q |
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| T |
4002127 |
attcattatataaactcaagtgatgagaattgacaaactgtataatgtctaggcataagaaccatacttttttctctaaaccatgaaattatgagaaaga |
4002028 |
T |
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| Q |
170 |
atcttttaacatccactaccttcaacccctttctaaaaagcccgttaacccaaataacttg |
230 |
Q |
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| T |
4002027 |
atcttttaacatccactaccttcaacatctttctcaaaaacatgttaacccaaataacttg |
4001967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 43 - 160
Target Start/End: Complemental strand, 32723570 - 32723453
Alignment:
| Q |
43 |
ttgcaatgcaaatacatgagacacaacattcattttataaactcaagtgatgagaattcacaaatcgtataatgtctagacataagaaccatactttttt |
142 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| | ||||||||||| |||||| ||| ||||| |||||||| |
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| T |
32723570 |
ttgcaatgcaaatacttgagacacaacattcattttataaattcaagtgatgagaattaagaaatcgtataaagtctaggcatgagaactgtactttttc |
32723471 |
T |
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| Q |
143 |
ctctgaaccgtgaaatgc |
160 |
Q |
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| T |
32723470 |
ctctaaaccattaaatgc |
32723453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 234
Target Start/End: Complemental strand, 32723453 - 32723349
Alignment:
| Q |
132 |
catacttttttctctgaaccgtgaaatgctgagaaagaatcttttaacatccactaccttcaacccctttctaaaaagcccgt--taacccaaataactt |
229 |
Q |
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|||||||||| |||||||| ||||||||||| |||||||||| |||||||||||||||||||| ||||||| |||| | || |||| |||||||||| |
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| T |
32723453 |
catactttttcatctgaaccatgaaatgctgataaagaatcttgtaacatccactaccttcaacacctttctcaaaaacatgttataactcaaataactt |
32723354 |
T |
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| Q |
230 |
gtgtc |
234 |
Q |
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||||| |
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| T |
32723353 |
gtgtc |
32723349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 132 - 234
Target Start/End: Complemental strand, 15720179 - 15720075
Alignment:
| Q |
132 |
catacttttttctctgaaccgtgaaatgctgagaaagaatcttttaacatccactaccttcaacccctttctaaaaagcccgt--taacccaaataactt |
229 |
Q |
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|||||||||| |||||||| |||||| ||||||||||||||| |||||||||||||||||||| ||||||| |||| | || ||||||||||||||| |
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| T |
15720179 |
catactttttcatctgaaccatgaaatactgagaaagaatcttgtaacatccactaccttcaacacctttctcaaaaacttgttataacccaaataactt |
15720080 |
T |
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| Q |
230 |
gtgtc |
234 |
Q |
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||||| |
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| T |
15720079 |
gtgtc |
15720075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 160
Target Start/End: Complemental strand, 15720295 - 15720179
Alignment:
| Q |
43 |
ttgcaatgcaaatacatgagacacaacattcattttataaactcaagtgatgagaattcacaaatcgtataatgtctagacataagaaccatactttttt |
142 |
Q |
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||||||||||||||| ||| ||| || |||||||||||||| |||||||||||||||||| |||| |||||| |||||| ||| ||||| |||||||| |
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| T |
15720295 |
ttgcaatgcaaatacttga-acataatattcattttataaattcaagtgatgagaattcagaaattgtataaagtctaggcatgagaactgtactttttc |
15720197 |
T |
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| Q |
143 |
ctctgaaccgtgaaatgc |
160 |
Q |
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|||| |||| | |||||| |
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| T |
15720196 |
ctctaaaccattaaatgc |
15720179 |
T |
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