View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2963_low_15 (Length: 230)
Name: NF2963_low_15
Description: NF2963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2963_low_15 |
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| [»] scaffold0406 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 9e-97; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 5664870 - 5664656
Alignment:
| Q |
1 |
tatatgggtgcaattgtattcaagtttttaaatacaatgacaataat-ttgagggcttccctatatcatattctctcctcctacaataaactaattacca |
99 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
5664870 |
tatatgggtgcaattgtattcaagcttttaaatacaatgacaataatattgagggcttccctgtatcatattctctcctcctacaataaattaattacca |
5664771 |
T |
|
| Q |
100 |
atgtgtgccttcttgtccaatgccacataccactctacaactagctcccacactatatattttctaacagttctatcaaagccatgttcggttattcact |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5664770 |
atgtgtgccttcttgtccaatgccacataccactctacaacttgcttccacactatatattttctaacagttctatcagagccatgttcggttattcact |
5664671 |
T |
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| Q |
200 |
agcatagcaaaatat |
214 |
Q |
| |
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||| ||||||||||| |
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| T |
5664670 |
agcgtagcaaaatat |
5664656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 5663799 - 5663632
Alignment:
| Q |
1 |
tatatgggtgcaattgtattcaagtttttaaatacaatgacaataatttgagggcttccctatatcatattctctcctcctacaataaactaattaccaa |
100 |
Q |
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||||||||||| |||||||| || |||||||||||| |||||| || ||||||||| |||| |||||||||||| ||||||| | ||| ||| ||| |
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| T |
5663799 |
tatatgggtgcgattgtatttaaacatttaaatacaattacaatatattaagggcttccatatactatattctctccttctacaatgagctatttatcaa |
5663700 |
T |
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| Q |
101 |
tgtgtgccttcttgtccaatgccacataccactctacaactagctcccacactatatattttctaaca |
168 |
Q |
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| T |
5663699 |
tgtgtgtcttcttgtccaatgctactaaccattgtaccactagcacccacaatatatattttctaaca |
5663632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 5048100 - 5048149
Alignment:
| Q |
53 |
ggcttccctatatcatattctctcctcctacaataaactaattaccaatg |
102 |
Q |
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| T |
5048100 |
ggcttcaccatatcatattctctcctcctacaataaactacttaccaatg |
5048149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 120
Target Start/End: Original strand, 5046558 - 5046625
Alignment:
| Q |
53 |
ggcttccctatatcatattctctcctcctacaataaactaattaccaatgtgtgccttcttgtccaat |
120 |
Q |
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| T |
5046558 |
ggcttcaccatatcatattctctcctcctacaatgagctacttaccaatgcgtgtccttttgtccaat |
5046625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 120
Target Start/End: Original strand, 5047329 - 5047396
Alignment:
| Q |
53 |
ggcttccctatatcatattctctcctcctacaataaactaattaccaatgtgtgccttcttgtccaat |
120 |
Q |
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| T |
5047329 |
ggcttcaccatatcatattctctcctcctacaatgagctacttaccaatgcgtgtccttttgtccaat |
5047396 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 24853402 - 24853562
Alignment:
| Q |
9 |
tgcaattgtattcaagtttttaa-atacaatgacaataat-ttgagggcttccctatatcatattctctcctcctacaataaactaattaccaatgtgtg |
106 |
Q |
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|||||||||||||||| ||||| || ||||| ||||||| |||| |||||| |||||||||||| |||||||||||| | |||||||||||| |||| |
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| T |
24853402 |
tgcaattgtattcaagcctttaagatgcaatgtcaataatattgaaggcttcatcatatcatattctttcctcctacaatgagctaattaccaatatgtg |
24853501 |
T |
|
| Q |
107 |
ccttcttgtccaatgccacataccactctacaactagctcccacactatatattttctaaca |
168 |
Q |
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| T |
24853502 |
tcctcttgtccaatgctactaaacactccaccactagctcctacactatat-ttttctaaca |
24853562 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 122
Target Start/End: Original strand, 24856348 - 24856408
Alignment:
| Q |
62 |
atatcatattctctcctcctacaataaactaattaccaatgtgtgccttcttgtccaatgc |
122 |
Q |
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||||||||||||||||||||||||| | |||||||||||| |||| | ||||||||||||| |
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| T |
24856348 |
atatcatattctctcctcctacaatgagctaattaccaatatgtgtcatcttgtccaatgc |
24856408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 51246670 - 51246788
Alignment:
| Q |
1 |
tatatgggtgcaattgtattcaagtttttaa-atacaatgacaataat-ttgagggcttccctatatcatattctctcctcctacaataaactaattacc |
98 |
Q |
| |
|
|||||||||||||||||||||||| ||| || |||| ||||||| |||| |||||| | | ||||||||||||||||||||||| | |||||| | |
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| T |
51246670 |
tatatgggtgcaattgtattcaagcctttgggatgtaatgtcaataatattgaaggcttcaccaaatcatattctctcctcctacaatgagctaattcct |
51246769 |
T |
|
| Q |
99 |
aatgtgtgccttcttgtcc |
117 |
Q |
| |
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|||||||| | |||||||| |
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| T |
51246770 |
aatgtgtgtcctcttgtcc |
51246788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0406
Description:
Target: scaffold0406; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 6328 - 6466
Alignment:
| Q |
1 |
tatatgggtgcaattgtattcaagtttttaa-atacaatgacaataat-ttgagggcttccctatatcatattctctcctcctacaataaactaattacc |
98 |
Q |
| |
|
|||||||||| ||||||||||||| ||| | || ||||| ||||||| |||| |||||| | | |||||||| |||||||||| ||| | |||||| | |
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| T |
6328 |
tatatgggtgaaattgtattcaagcctttgagatgcaatgtcaataatattgaaggcttcacaaaatcatattatctcctcctataatgagctaattcct |
6427 |
T |
|
| Q |
99 |
aatgtgtgccttcttgtccaatgccacataccactctac |
137 |
Q |
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|||||||| | ||||||||||||| || |||||||||| |
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|
| T |
6428 |
aatgtgtgtcatcttgtccaatgctactaaccactctac |
6466 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 117
Target Start/End: Complemental strand, 20978848 - 20978765
Alignment:
| Q |
35 |
caatgacaataat-ttgagggcttccctatatcatattctctcctcctacaataaactaattaccaatgtgtgccttcttgtcc |
117 |
Q |
| |
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||||| ||||||| |||| |||||| | |||||||||||||||||||||||||| || || || |||||||| | |||||||| |
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|
| T |
20978848 |
caatgtcaataatattgaaggcttcaccatatcatattctctcctcctacaatatgcttatcactaatgtgtgtcctcttgtcc |
20978765 |
T |
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