View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2963_low_2 (Length: 640)
Name: NF2963_low_2
Description: NF2963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2963_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-110; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 352 - 606
Target Start/End: Complemental strand, 4573544 - 4573290
Alignment:
| Q |
352 |
gacaacatataaaaatgaatttggcttttatggaattgagactttgtagataatcttgagcttttgttgaaagggacaaatatttttgtgatgtccaatg |
451 |
Q |
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| T |
4573544 |
gacaacatataaaaatgaatttggcttttatggaattgagactttgtagataatcttgagctcttgttgaaagggacaaatatttttgtgatgtccaatg |
4573445 |
T |
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| Q |
452 |
tctgactcattcaagcatggaaaataataaccaatagactattataaaataaataagtggtcatgattattttctttgtacaacaaaaatctttgatgtc |
551 |
Q |
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||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4573444 |
tctgactgattcaagcatggaaaataatagccaatagactattataaaataaataagtggtcataattattttctttgtacaacaaaaatctttgatgtc |
4573345 |
T |
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| Q |
552 |
agaactatcttacacttactagaataaaagtgtcatctagttcaattttgaaact |
606 |
Q |
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|||||||| | | |||| ||||| ||||||| |||||||||||||||||||| |
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| T |
4573344 |
agaactatatatcttatacttgaatagaagtgtcttctagttcaattttgaaact |
4573290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 360 - 606
Target Start/End: Complemental strand, 4559665 - 4559418
Alignment:
| Q |
360 |
ataaaaatgaatttggcttttatggaattgagactttgtagataatcttgagcttttgttgaaagggacaaatattttt-gtgatgtccaatgtctgact |
458 |
Q |
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|||||| | ||||||||||||||| ||||| ||||||| |||||||||||||| |||||||||| |||||| | ||||| |||||||||||||||||||| |
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| T |
4559665 |
ataaaagtaaatttggcttttatgcaattgtgactttggagataatcttgagcctttgttgaaaaggacaatttttttttgtgatgtccaatgtctgact |
4559566 |
T |
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| Q |
459 |
cattcaagcatggaaaataataaccaatagactattataaaataaataagtggtcatgattattttctttgtacaacaaaaatctttgatgtcagaacta |
558 |
Q |
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| T |
4559565 |
gattcaagcatggaaaataatagccaatagactattataaaataaataagtggtcatgattattttctttgtacaacaaaaatctttgatgtcagaacta |
4559466 |
T |
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| Q |
559 |
tcttacacttactagaataaaagtgtcatctagttcaattttgaaact |
606 |
Q |
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| T |
4559465 |
tcttacacttacttgaataaaagtgtcatctagttcaattttgaaact |
4559418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 360 - 606
Target Start/End: Complemental strand, 4566526 - 4566276
Alignment:
| Q |
360 |
ataaaaatgaatttggcttttatggaattgagacttt-gtagataatcttgagcttttgttgaaagggacaaatattttt---gtgatgtccaatgtctg |
455 |
Q |
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|||||| |||||||| |||||||| ||||| ||||| | |||||||| ||||| |||||||||||||| ||||||||| |||||||| |||||||| |
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| T |
4566526 |
ataaaagtgaatttgacttttatgcaattgtaacttttggagataatcatgagcccttgttgaaagggactaatattttttttgtgatgtctaatgtctg |
4566427 |
T |
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| Q |
456 |
actcattcaagcatggaaaataataaccaatagactattataaaataaataagtggtcatgattattttctttgtacaacaaaaatctttgatgtcagaa |
555 |
Q |
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||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4566426 |
actgattcaagcatggaaaataatagccaatagactattataaaataaataagtggacataattattttctttgtacaacaaaaatctttgatgtcagaa |
4566327 |
T |
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| Q |
556 |
ctatcttacacttactagaataaaagtgtcatctagttcaattttgaaact |
606 |
Q |
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|||||||| ||||||| ||||| ||||| | |||||||||||||||||||| |
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| T |
4566326 |
ctatcttatacttacttgaatagaagtgccttctagttcaattttgaaact |
4566276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 24 - 188
Target Start/End: Complemental strand, 4573875 - 4573711
Alignment:
| Q |
24 |
atatagatcatgacgcgcacctgctaaatcagctatacccttcgcctcgtgcaagctacaaaatagcaacatgctaaaaacaacaaacaactgtgcctag |
123 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
4573875 |
atatagatcatgacgcacacctgctaaatcagctatacccttcgcctcatgcaagctacaaaatagaaacatgctaaaaacaacaaacaactgcgcctag |
4573776 |
T |
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| Q |
124 |
cgcatgggggcaatagtaaagtnnnnnnnctttcaacatgagatttcaagacatattttaacatt |
188 |
Q |
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| T |
4573775 |
cgcatgggggcaatagtaaagtaaaaaaactttcaacatgagatttcaagacatattttaacatt |
4573711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 185 - 284
Target Start/End: Complemental strand, 4573663 - 4573566
Alignment:
| Q |
185 |
cattttaccattgttattaagggaatttataaactttgtcctttcagattacaagctcaaactcttaccatggagctgatacgtcatagcgtgataaagg |
284 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
4573663 |
cattttaccattgttattaagggaattta--aactttgtcctttgagattacaagctcaaactcttaccattgagctgatacgttgtagcgtgataaagg |
4573566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 4560101 - 4559971
Alignment:
| Q |
1 |
actgatgcaaaaaatgcttatctatatagatcatgacgcgcacctgc---taaatcagctatacccttcgcctcgtgcaagctacaaaatagcaacatgc |
97 |
Q |
| |
|
|||||||||||| |||||||||||| |||| ||| || ||||||| | | ||||||||| ||||||||| | |||||||||||| || ||||| || |
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| T |
4560101 |
actgatgcaaaacctgcttatctata--gatcttgatgcacacctgcgcctcagtcagctatatccttcgccttgcgcaagctacaaatta-caacaagc |
4560005 |
T |
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| Q |
98 |
taaaaacaacaaacaactgtgcctagcgcatggg |
131 |
Q |
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| T |
4560004 |
tgaaaacaacaaacaactgcgcctagtgcatggg |
4559971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 188
Target Start/End: Complemental strand, 4559940 - 4559905
Alignment:
| Q |
153 |
ctttcaacatgagatttcaagacatattttaacatt |
188 |
Q |
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|||||||||||||||||||||| ||||||||||||| |
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| T |
4559940 |
ctttcaacatgagatttcaagaaatattttaacatt |
4559905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 188
Target Start/End: Complemental strand, 4566820 - 4566785
Alignment:
| Q |
153 |
ctttcaacatgagatttcaagacatattttaacatt |
188 |
Q |
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|||| ||||||||||||||||||||||||||||||| |
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| T |
4566820 |
cttttaacatgagatttcaagacatattttaacatt |
4566785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 4566916 - 4566843
Alignment:
| Q |
65 |
tcgcctcgtgcaagctacaaaatagcaacatgctaaaaacaacaaacaactgtgcctagcgcatgggggcaata |
138 |
Q |
| |
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||||||| | ||||| |||||||||||||||| | |||||| |||||| || ||| ||||||||||| ||||| |
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| T |
4566916 |
tcgcctcatccaagcaacaaaatagcaacatgatgaaaacagcaaacagcttcgcccagcgcatggggacaata |
4566843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 120; Significance: 4e-61; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 367 - 598
Target Start/End: Original strand, 16684647 - 16684881
Alignment:
| Q |
367 |
tgaatttggcttttatggaattgagactttgtagataatcttgagcttttgttgaaagggacaaatatttttgtgatgtccaatgtctgactcatt-caa |
465 |
Q |
| |
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||||||||||||||||| ||||| ||||||| |||||||||||||| |||||||||||||| ||||||||||| ||||| ||||| ||||| ||| ||| |
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| T |
16684647 |
tgaatttggcttttatgcaattgtgactttggagataatcttgagcccttgttgaaagggactaatatttttgttatgtctaatgtttgactgatttcaa |
16684746 |
T |
|
| Q |
466 |
gcatggaaaataataaccaatagactattataaaataaataagtggtcatgattattttctttgtacaacaaaaatctttgatgtcagaactatcttaca |
565 |
Q |
| |
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||||||||||||||| |||| ||||||| ||||||||||||||||| ||| ||||||||||||||||||||||| | |||||||| |||| | ||||| | |
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| T |
16684747 |
gcatggaaaataatagccaaaagactatcataaaataaataagtggacataattattttctttgtacaacaaaagtgtttgatgtgagaagtgtcttata |
16684846 |
T |
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| Q |
566 |
ct--tactagaataaaagtgtcatctagttcaatt |
598 |
Q |
| |
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|| |||| ||||| ||||||| |||||||||||| |
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| T |
16684847 |
cttgtactggaatacaagtgtcttctagttcaatt |
16684881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 16684249 - 16684305
Alignment:
| Q |
52 |
tcagctatacccttcgcctcgtgcaagctacaaaatagcaacatgctaaaaacaaca |
108 |
Q |
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||||||||||| || |||||| | ||||||||||||||||| ||||| ||||||||| |
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| T |
16684249 |
tcagctataccatttgcctcgcgtaagctacaaaatagcaatatgctgaaaacaaca |
16684305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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