View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2963_low_6 (Length: 320)
Name: NF2963_low_6
Description: NF2963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2963_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 8 - 304
Target Start/End: Complemental strand, 2516893 - 2516597
Alignment:
| Q |
8 |
cagcagagacaaacaatagtttcttaattcttgggttaggaatgatttgttgtaagttgtaacttgaaaacgagtatgattaccaagaatccatttagtt |
107 |
Q |
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| T |
2516893 |
cagcagaaacaaacaatagtttcttaattcttgggttaggaatgatttgttgtaagttgtaacttgaaaacgagtatgattaccaagaatccatttagtt |
2516794 |
T |
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| Q |
108 |
tctttttattgaccaacaaaaatattgtcttcctttactttaatgtacgtcttttgcaactaggtggatctgttaaaaaataaatttggatacgatgaag |
207 |
Q |
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| T |
2516793 |
tctttttattgaccaacaaaaatattgtcttcctttactttaatgtacatcttttgcaaccaggtggatatgttaaaaaataaatttggatacgatgaag |
2516694 |
T |
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| Q |
208 |
ccattaactacaaagaagaacatgacctcaatgcagcattaaaaaggtcagtacataagtgatgcagtcgaaattttttagttcaatatgtttgttg |
304 |
Q |
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| T |
2516693 |
ccattaactacaaagaagaacatgacctcaatgcagcattaaaaaggtcagtacataagtgatgcagtcgaaattttttagttcaatatgtttgttg |
2516597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 105 - 259
Target Start/End: Complemental strand, 2505862 - 2505708
Alignment:
| Q |
105 |
gtttctttttattgaccaacaaaaatattgtcttcctttactttaatgtacgtcttttgcaactaggtggatctgttaaaaaataaatttggatacgatg |
204 |
Q |
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| T |
2505862 |
gtttcttttcattcacaagcaaaaatatggccttcctttacttaaaaatatatcttttgcaaccaggtggatctgttgaagaataaatttggatacgatg |
2505763 |
T |
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| Q |
205 |
aagccattaactacaaagaagaacatgacctcaatgcagcattaaaaaggtcagt |
259 |
Q |
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| T |
2505762 |
aagccattaactacaaagaagagcaagacctcaatgcaacattgaaaaggtcagt |
2505708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 141 - 259
Target Start/End: Complemental strand, 2512484 - 2512366
Alignment:
| Q |
141 |
tttactttaatgtacgtcttttgcaactaggtggatctgttaaaaaataaatttggatacgatgaagccattaactacaaagaagaacatgacctcaatg |
240 |
Q |
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| T |
2512484 |
tttactttaatgtatatcttctggaaccaggtggatctgttgaagaataaatttggatacgatgaagccattaactacaaagaagaacaagacctggatg |
2512385 |
T |
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| Q |
241 |
cagcattaaaaaggtcagt |
259 |
Q |
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| T |
2512384 |
cagcattgaaaaggtcagt |
2512366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 169 - 256
Target Start/End: Original strand, 1459414 - 1459501
Alignment:
| Q |
169 |
aggtggatctgttaaaaaataaatttggatacgatgaagccattaactacaaagaagaacatgacctcaatgcagcattaaaaaggtc |
256 |
Q |
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| T |
1459414 |
aggtggatttgttgaaaaataaatttggatatgatgaagcctttaactacaaagaagaaccagacctcaatgcagctttgaaaaggtc |
1459501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 169 - 256
Target Start/End: Original strand, 2429121 - 2429208
Alignment:
| Q |
169 |
aggtggatctgttaaaaaataaatttggatacgatgaagccattaactacaaagaagaacatgacctcaatgcagcattaaaaaggtc |
256 |
Q |
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| T |
2429121 |
aggtggatttgttgaaaaataaatttggatatgatgaagcctttaactacaaagaagaaccagacctcaatgcagctttgaaaaggtc |
2429208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 169 - 256
Target Start/End: Original strand, 2432039 - 2432126
Alignment:
| Q |
169 |
aggtggatctgttaaaaaataaatttggatacgatgaagccattaactacaaagaagaacatgacctcaatgcagcattaaaaaggtc |
256 |
Q |
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| T |
2432039 |
aggtggatcttttgaagaataaatttggatatgatgaagcatttaactacaaagaagaacctgacctcaatgcagctttaaaaaggtc |
2432126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 166 - 256
Target Start/End: Original strand, 2435471 - 2435561
Alignment:
| Q |
166 |
actaggtggatctgttaaaaaataaatttggatacgatgaagccattaactacaaagaagaacatgacctcaatgcagcattaaaaaggtc |
256 |
Q |
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| T |
2435471 |
actaggtagatctgttgaagaataaatttggatatgatgaagcctttaactacaaagaagaaccagacctcaatgcaactttaaaaaggtc |
2435561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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