View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2963_low_8 (Length: 264)
Name: NF2963_low_8
Description: NF2963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2963_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 35106547 - 35106795
Alignment:
| Q |
1 |
aataaacagcattttctggaagttacatgatgaattcctccatctcttttataaaccgtgcctgcaaagcagatgattcacactaagcattgactgcaag |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35106547 |
aataaacagcattttctggaagttacatgatgaatacctccatctcttttataaaccgtgcctgcaaagcagatgattcacactaagcattgactgcaag |
35106646 |
T |
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| Q |
101 |
ttaacaatctactactctcaacttctagagttctcaactacatcaaacatgtcgttgattccaagtttctttggtggccgaggccgaaggagcaacgttt |
200 |
Q |
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|||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35106647 |
ttaaaaatctactacgctcaacttccagagttctcaactacatcaaacatgtcgttgattccaagtttctttggtggccgaggccgaaggagcaacgttt |
35106746 |
T |
|
| Q |
201 |
tcgatccattctcccttgacgtttgggaccccttcaaggattttccttt |
249 |
Q |
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| T |
35106747 |
tcgatccattctcccttgacgtttgggacccattcaaggattttccttt |
35106795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 149 - 249
Target Start/End: Complemental strand, 35073165 - 35073065
Alignment:
| Q |
149 |
atgtcgttgattccaagtttctttggtggccgaggccgaaggagcaacgttttcgatccattctcccttgacgtttgggaccccttcaaggattttcctt |
248 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
35073165 |
atgtcgctgattccaagtttctttggtggccgaggccgaaggagcaacgttttcgatccattctcccttgacgtgtgggacccattcaaggattttcctt |
35073066 |
T |
|
| Q |
249 |
t |
249 |
Q |
| |
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| |
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| T |
35073065 |
t |
35073065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 149 - 244
Target Start/End: Complemental strand, 36296932 - 36296843
Alignment:
| Q |
149 |
atgtcgttgattccaagtttctttggtggccgaggccgaaggagcaacgttttcgatccattctcccttgacgtttgggaccccttcaaggatttt |
244 |
Q |
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| T |
36296932 |
atgtcgctgattccaagtttctttggtggccga------aggagcaacgttttcgatccattctcccttgatgtttgggatccctttaaggatttt |
36296843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 149 - 246
Target Start/End: Original strand, 35097526 - 35097617
Alignment:
| Q |
149 |
atgtcgttgattccaagtttctttggtggccgaggccgaaggagcaacgttttcgatccattctcccttgacgtttgggaccccttcaaggattttcc |
246 |
Q |
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| T |
35097526 |
atgtcgttgattccaagtttctttggtggcc------gaaggagcaacacttttgatccattctctcttgacgtttgggatcccttcaaggattttcc |
35097617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 149 - 249
Target Start/End: Complemental strand, 24014658 - 24014564
Alignment:
| Q |
149 |
atgtcgttgattccaagtttctttggtggccgaggccgaaggagcaacgttttcgatccattctcccttgacgtttgggaccccttcaaggattttcctt |
248 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24014658 |
atgtcgttgattccaagtttctttggtggccga------aggagcaacgttttcgatccattctcccttgacgtttgggaccccttcaaggattttcctt |
24014565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 149 - 249
Target Start/End: Complemental strand, 24041215 - 24041121
Alignment:
| Q |
149 |
atgtcgttgattccaagtttctttggtggccgaggccgaaggagcaacgttttcgatccattctcccttgacgtttgggaccccttcaaggattttcctt |
248 |
Q |
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|||||| |||||||||||||||||||||||||| ||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24041215 |
atgtcgctgattccaagtttctttggtggccga------aggagcaacacttttgatccattttcccttgacgtttgggaccccttcaaggattttcctt |
24041122 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 129 - 246
Target Start/End: Original strand, 3122898 - 3123008
Alignment:
| Q |
129 |
agttctcaactacatcaaacatgtcgttgattccaagtttctttggtggccgaggccgaaggagcaacgttttcgatccattctcccttgacgtttggga |
228 |
Q |
| |
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||||||||||| ||||||| |||||| |||||||||||||||||||||||||| | |||||||||||||||||| |||| ||| ||||||||||| |
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| T |
3122898 |
agttctcaacttcatcaaa-atgtcgctgattccaagtttctttggtggccga------atgagcaacgttttcgatcccttcttcctcgacgtttggga |
3122990 |
T |
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| Q |
229 |
ccccttcaaggattttcc |
246 |
Q |
| |
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|||||||||||||||||| |
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| T |
3122991 |
ccccttcaaggattttcc |
3123008 |
T |
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