View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2964_high_10 (Length: 587)
Name: NF2964_high_10
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2964_high_10 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 502; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 8 - 587
Target Start/End: Original strand, 29083775 - 29084358
Alignment:
| Q |
8 |
tagcaaaggcaaagaattgcttctaagttaggctctatccacaata----aaatagcaaacccataaagtt-aatcttgcggctaagaatttcatcaaag |
102 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
29083775 |
tagcaaaggcaaagaattgcttctaagttaggct--atccacaatataagaaatacttaacccataaagtttaatcttgcggctaagaatttcatcaaag |
29083872 |
T |
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| Q |
103 |
caaagtaacgttttggttttttaataccaaagaaactcataactcatcattgctcacaaatactttatattacaaatatgagaagcattatatatccatt |
202 |
Q |
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| T |
29083873 |
taaagtaacgttttggttttttaataccaaagaaactcataattcatcattgctcacaaatagtttatattacaaatatgagaagcattatatatccatt |
29083972 |
T |
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| Q |
203 |
atttctacatcaccatttatcaatattttc-atttcttccccaaaggacacaaccataaaataacaaacaactataatcattcataatgccaagtgttgt |
301 |
Q |
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| T |
29083973 |
atttctacatcaccatttatcaatattttctatttcttccccaaaggacacaaccataaaataacaaacaactataatcattcataatgccaagagttgt |
29084072 |
T |
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| Q |
302 |
accttggaaactcctaagtttcatttattttgtttttactttattatcttttatctatctctagcatattcaccgtaacaaacaatttcccttatactat |
401 |
Q |
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| T |
29084073 |
accttggaaactcctaagtttcatttattttgtttttactttattatcttttttctatctctagcatattcaccgtaacaaacaatttcccttatactat |
29084172 |
T |
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| Q |
402 |
attgaccggcacactcgccggtgcaggcatgcacgccgccacttccgaccaccagattccagctgttaaactaacgagtgttccggggtggtcggtcaaa |
501 |
Q |
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| T |
29084173 |
attgaccggcacactcgccggtgcaggcatgcacgccgccacttccgaccaccagattccagctgttaaactaacgagtgttccggggtggtcggtcgaa |
29084272 |
T |
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| Q |
502 |
tatggtcgccggtgcacatttgatgcattaggaattgacaagtgccaaacaggtgactgtggtggaagacttgaatgtgatgggaa |
587 |
Q |
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| T |
29084273 |
tatggtcgccggtgcacatttgatgcattaggaattgacaagtgccaaacaggtgattgtggtggaagacttgaatgtgatgggaa |
29084358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 12 - 430
Target Start/End: Original strand, 29091102 - 29091522
Alignment:
| Q |
12 |
aaaggcaaagaattgcttctaagttaggctctatccacaataaaa----tagcaaacccataaagttaatcttgcggctaagaatttcatcaaagcaaag |
107 |
Q |
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| T |
29091102 |
aaaggcaaagaattgcttctaagttaggct--atccacaataaaagaaatactaaacccataaagttcattttgcggctaagaatttcatcaaagcaaag |
29091199 |
T |
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| Q |
108 |
taacgttttggttttttaataccaaagaaactcataactcatcattgctcacaaatactttatattacaaatatgagaagcattatatatccattatttc |
207 |
Q |
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| T |
29091200 |
taacgttttggttttttaataccaaagaaactcataattcatcataagacaaaactactctatattacaaatatgagaaacattatatatgcattatttc |
29091299 |
T |
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| Q |
208 |
tacatcaccatttatcaatattttc-atttcttccccaaaggacacaaccataaaataacaaacaactataatcattcataatgccaagtgttgtacctt |
306 |
Q |
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| T |
29091300 |
tacatcacatattatcaattctttctatttctttcccaaaggacacaaccataaaataacaaacaactataatcattcataatgccaagagttgtacctt |
29091399 |
T |
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| Q |
307 |
ggaaactcctaagtttcatttattttgtttttactttattatcttttatctatctctagcatattcaccgtaacaaacaatttcccttatactatattga |
406 |
Q |
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| T |
29091400 |
ggaaactcttaagtttcattttttttgtttttactttgttatctttt-tctttctctaccatattcaccataacaaacaattgcccttatactatatggc |
29091498 |
T |
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| Q |
407 |
ccggcacactcgccggtgcaggca |
430 |
Q |
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| T |
29091499 |
caggcacactcgccggtgcaggca |
29091522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 514 - 587
Target Start/End: Original strand, 29091624 - 29091697
Alignment:
| Q |
514 |
tgcacatttgatgcattaggaattgacaagtgccaaacaggtgactgtggtggaagacttgaatgtgatgggaa |
587 |
Q |
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| T |
29091624 |
tgcacatttgatgcatccggaattggcaaatgccaaacgggtgattgtggtggaagacttgaatgtgatgggaa |
29091697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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