View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2964_high_13 (Length: 550)
Name: NF2964_high_13
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2964_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 204 - 532
Target Start/End: Original strand, 5017200 - 5017528
Alignment:
| Q |
204 |
ttacatttttgtctatttcaattcgccccattttcattttattaagatgaatatgattaacagaacaagcaagacaaagttgaaccagatatggctcttg |
303 |
Q |
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| T |
5017200 |
ttacagttttgtctatttcaattcgccccattttcattttattaagatgaatatgattaacagaacaagcaagacaaagttgaaccagatatggctcttg |
5017299 |
T |
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| Q |
304 |
acagcaacagtagtagtaattcttcgcctgacaatgtgcctaactcaaatcctcaacaaccatcaatgtttcagtggccttgttttcctcagactgccac |
403 |
Q |
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| T |
5017300 |
acagcaacagtagtagtaattattcgcctgacaatgtgcctaactcaaatcctcaacaaccatcaatgtttcattggccttgttttcctcagactgccac |
5017399 |
T |
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| Q |
404 |
tcaagcaccatggcagcagcagttaccatatcctcaacaaggggctcaggtatttcagccgactcagctgttcggagcaaccatccctcccatttttcag |
503 |
Q |
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| T |
5017400 |
tcaagcaccatggcagcagcagttaccatatcctcaacaaggggcgcaggtatttcagccgactcagctgttcggagcaaacatccctcccatttttcag |
5017499 |
T |
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| Q |
504 |
acattcaatggtaatggctggcaagcatt |
532 |
Q |
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| T |
5017500 |
acattcaatggtaatggctggcaagcatt |
5017528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 62 - 208
Target Start/End: Original strand, 5016606 - 5016750
Alignment:
| Q |
62 |
tcttcgctttctccttcgttttagctttgttaatgacgagatttgagacatttgcatttgaagatgaaatgctaatgatgtatttattaaaaataacttt |
161 |
Q |
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| T |
5016606 |
tcttcgctttctccttcgttttagctt-gttaatgacgagatttgagacatttgcatttgaagatgaaatgctaatgatgtatttatt-aaaataacttt |
5016703 |
T |
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| Q |
162 |
taacatttttattatttctaacaaattgagacaattgtatacttaca |
208 |
Q |
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| T |
5016704 |
taacatttttattatttctaacaaattgagacaattgtatacttaca |
5016750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 477 - 529
Target Start/End: Original strand, 5005553 - 5005605
Alignment:
| Q |
477 |
ggagcaaccatccctcccatttttcagacattcaatggtaatggctggcaagc |
529 |
Q |
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| T |
5005553 |
ggagcaaatatccctcccatttttcagacattcaatgttaatggctggcaagc |
5005605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 281
Target Start/End: Original strand, 5005292 - 5005339
Alignment:
| Q |
234 |
ttttcattttattaagatgaatatgattaacagaacaagcaagacaaa |
281 |
Q |
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| T |
5005292 |
ttttcatttgattaagatgaatatgattagcagaacacgcaggacaaa |
5005339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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