View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2964_high_17 (Length: 475)
Name: NF2964_high_17
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2964_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 12 - 472
Target Start/End: Complemental strand, 35471223 - 35470765
Alignment:
| Q |
12 |
ataggaacagacaaacacctgaatttgatacacaagaaactatgtgattgagtttctgtggaagatttatttgatgtgaaatgattagctgcttcagtct |
111 |
Q |
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| T |
35471223 |
ataggaacagacaaacacctgaatttga------agaaactatgtgatggagtttctatgctagatttatttgatgtggaatgattagctacttcagtct |
35471130 |
T |
|
| Q |
112 |
tgcaacaaatcttagaatagttaaaatagaataactaaatatatttcatctaaatctaagataagcacgaactattatcttatttacaccaaaacaaaaa |
211 |
Q |
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| T |
35471129 |
tgcaacaaatcttagaatagttaaaatagaataactaaatctatttcatctaaatctaagataagcacgaactattatctaatttacaccaaaa-aaaaa |
35471031 |
T |
|
| Q |
212 |
caactcttctatctatttgaactccaacttcaagttttgcttttagca----tatcaatatggaatcccaactttaatgttatccaatttcaagccctca |
307 |
Q |
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| T |
35471030 |
caactcttctatctatttgaactccaacttcaagttttgcttttagcatatctatcaatatgg-ataccaactttaatgttatccaatttcaagccctca |
35470932 |
T |
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| Q |
308 |
agtcatgctta--acgcataaatgaaaatcagtatattaggaaatttcatatagaatctctgaaaagtgcaaaaaatatcaacacttccccacaaactgg |
405 |
Q |
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||||||||||| || ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
35470931 |
agtcatgcttaccacaaatatatgaaaatcagtatactaggaaatttcatatagaatctctgaaaagtgcaaaaaatattaacacttccccacaaactgg |
35470832 |
T |
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| Q |
406 |
atagctctcacttatctccatgcactcatatgcaaccatgaaaatgatgacaagacaatagaatcta |
472 |
Q |
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||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||| |
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| T |
35470831 |
atagctctcacttatctccatccaatcatatgcaaccatgaaaatgatgacaagatcatagaatcta |
35470765 |
T |
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