View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2964_high_19 (Length: 464)
Name: NF2964_high_19
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2964_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 307
Target Start/End: Original strand, 41697074 - 41697356
Alignment:
| Q |
13 |
tgaacctatcaaaaacaaaaacatataaaacttaagtctaattaagaattacaatggtaaattaaaatcttaaatagattttattgttactatcttattt |
112 |
Q |
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| T |
41697074 |
tgaacctatcaaaaacaaaaacatataaaacttaagtctaattaagaattacaatggtaaatt-aaatcttaaatagattgtattgttactatcttattt |
41697172 |
T |
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| Q |
113 |
acttcaccagagagtactttgttaggtgtgtttgc--nnnnnnnnntccgattaaacccctttattttgaaaagttatgcaactaaattctatctgaata |
210 |
Q |
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| T |
41697173 |
acttcaccagagaatactttgttaggtgtgtttgcaaaaaaaaaaatccgattaaacccctttattttgaaaagttatgcaactaaattctatccgaata |
41697272 |
T |
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| Q |
211 |
acatcaaatccttaacgaccaagtcattcaaacaagtcaatacatgtattatggtaaccaccagaaaagcaaaaaagggcaaatctcatcacgcact |
307 |
Q |
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| T |
41697273 |
acatcaaatccttaa-------------caaccaagtcaatacatgtattatggtaaccacaagaaaagcaaaaaagggcaaatctcatcacgcact |
41697356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 306 - 447
Target Start/End: Original strand, 41697386 - 41697527
Alignment:
| Q |
306 |
ctatgtaagggcactattatagagttcaccatgtataaaccataagtattagtttgcaatataacaaaaattaaatcaatatattggttctttataatta |
405 |
Q |
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| T |
41697386 |
ctatgtaagagcactattatagagctcaccatgtataaaccataagtattagttagcaatataacaaaaattaaatcaatatattggttctttataatta |
41697485 |
T |
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| Q |
406 |
gaagaagagaatggagattcaaaaataaactcagaaacaact |
447 |
Q |
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| T |
41697486 |
gaagaagggaatggagattcaaaaataaactcagaaacaact |
41697527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 13 - 143
Target Start/End: Original strand, 41693235 - 41693365
Alignment:
| Q |
13 |
tgaacctatcaaaaacaaaaacatataaaacttaagtctaattaagaattacaatggtaaattaaaatcttaaatagattttattgttactatcttattt |
112 |
Q |
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||||||| || |||||||||| |||||||| | ||| |||||||| |||| ||||||||||| ||||||||||||||||| |||| ||||| |||||||| |
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| T |
41693235 |
tgaacctgtccaaaacaaaaatatataaaattaaagcctaattaaaaattgcaatggtaaatgaaaatcttaaatagattgtattattactctcttattt |
41693334 |
T |
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| Q |
113 |
acttcaccagagagtactttgttaggtgtgt |
143 |
Q |
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| T |
41693335 |
actccatcagagagtactttgttaggtgtgt |
41693365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 308 - 380
Target Start/End: Original strand, 41693572 - 41693644
Alignment:
| Q |
308 |
atgtaagggcactattatagagttcaccatgtataaaccataagtattagtttgcaatataacaaaaattaaa |
380 |
Q |
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| T |
41693572 |
atgtaagggcactattatagagctcaccatgtataaaccataagtgttagttagcaatataacataaattaaa |
41693644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 405
Target Start/End: Original strand, 41695016 - 41695048
Alignment:
| Q |
373 |
aaattaaatcaatatattggttctttataatta |
405 |
Q |
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| T |
41695016 |
aaattaaatcaatatattggttctttataatta |
41695048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 285
Target Start/End: Original strand, 41693472 - 41693520
Alignment:
| Q |
238 |
tcaaacaagtcaata-catgtattatggtaaccaccagaaaagcaaaaa |
285 |
Q |
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| T |
41693472 |
tcaaacaagtgaataacatgtattatggtaaccacaaggaaagcaaaaa |
41693520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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