View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2964_high_20 (Length: 451)
Name: NF2964_high_20
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2964_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 887296 - 887734
Alignment:
| Q |
1 |
aacaatgtgaagtttgaattactagttaaacattatataaaactgtcggtgagcacctttttattaagctacctttgattttatgatcctctaattaagt |
100 |
Q |
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|||||||||||||||||||||| |||| |||||||||||| || ||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
887296 |
aacaatgtgaagtttgaattacaagttgaacattatataaccctctcggtgagcacctttttgtgaagctacctttgattttatgatcctctaattaagt |
887395 |
T |
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| Q |
101 |
aattatattctaacatgctagctatatatccttaattttcagagtaaaggaaatatatgcttgctaatcgaaact------gactttgatgatgatgata |
194 |
Q |
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| T |
887396 |
aattatatactaacatgctagctatatatccttaattttcagagaaaaggaaatatatgcttgctattcgaagatagcaaggaaaatgactttgatgatg |
887495 |
T |
|
| Q |
195 |
ataatgtgataggaggtagtaaagaaannnnnnnnnnnnnatttgtactgattattattactttgatttgtaataacattttgttttggtgtcaacagct |
294 |
Q |
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| T |
887496 |
ataatgtgataggaggtagtaaagaaatctttctctttttatttgtactgattattattactttgatttgtaataacattttgttttggtgtcaacagct |
887595 |
T |
|
| Q |
295 |
ttatctatgaaggataagataatgatttttgacaacgagagaaagcaaattggatgggtccctgacgattgtactaaacttccccagcatcgttggtcgc |
394 |
Q |
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| T |
887596 |
ctctctatgagagataagataatgatttttgacaacgagaaaaagcagattggatgggttccagacgattgtactaaacttcccccacatcgttgatcga |
887695 |
T |
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| Q |
395 |
ttgaggcttaagaggaaggatatggataatggcaagatt |
433 |
Q |
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| T |
887696 |
ttgaggcttaagagggaggatatggataatggcaagatt |
887734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 31880668 - 31880610
Alignment:
| Q |
50 |
tgagcacctttttattaagctacctttgattttatgatcctctaattaagtaattatat |
108 |
Q |
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| T |
31880668 |
tgagcacctttttattaagctacctttgattttatgatcctctaattaaataattatat |
31880610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 248 - 330
Target Start/End: Complemental strand, 31880470 - 31880389
Alignment:
| Q |
248 |
attattactttgatttgtaataacattttgttttggtgtcaacagctttatctatgaaggataagataatgatttttgacaac |
330 |
Q |
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| T |
31880470 |
attattactttgatt-gtaataacaatttgttttggtgtcatcagctgtctctatgctcgataagataatgatttttgacaac |
31880389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 102 - 172
Target Start/End: Original strand, 31900074 - 31900142
Alignment:
| Q |
102 |
attatattctaacatgctagctatatatccttaattttcagagtaaaggaaatatatgcttgctaatcgaa |
172 |
Q |
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| T |
31900074 |
attatatactaacatgctagctatatatccttaattttcagagtaaaggaa--atatgtttgctaatcgaa |
31900142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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