View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2964_high_23 (Length: 426)
Name: NF2964_high_23
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2964_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 6133580 - 6133977
Alignment:
| Q |
1 |
gccgaagctgtaatcaactgcgcggtagcatagattcagtaacccccatttagtgttagggtcggctgaattcggcatgttgatagtgcaatagagggaa |
100 |
Q |
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| T |
6133580 |
gccgaagctgtaatcaactgcgcggtagcatagattcagtaactcccatttagtgttagggtcggctgaattgggcatgttgatagtgcgatagagggaa |
6133679 |
T |
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| Q |
101 |
gggtcctttgagatttcgcgccatatggtgcaaacattgtaagggcgaatgagaatatcgattgagtcaagcttccggaaaatggataacactgcatctc |
200 |
Q |
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| T |
6133680 |
tggtcctttgagatttcgcgccatatggtgcaaacattgtaagggcgaatgagaatatcgattgagtcaagcttccggaaaatggataacactgaatctc |
6133779 |
T |
|
| Q |
201 |
gtggaagatctacccagtttcgttctccagaatcggttacttgtttcgaatttggcgaggaggttgcggaagaagaagatga------ggattccattga |
294 |
Q |
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| T |
6133780 |
gtggaagatctacccagtttcgttctccagaatcggttacttgttttgaattcggcgaggaggttacggaagaagaagaagatgataaggattccattga |
6133879 |
T |
|
| Q |
295 |
attgaattgaattgaagaattagggcatgacaattgtaagatggagtatactattaaatagttttcagttttaatccaagccattgaacttgtaattgcc |
394 |
Q |
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| T |
6133880 |
attgaatt--------gaattagggcatgacaattgtaagatggagtatactattaaatagttttcagttttaatccaagccattgaacttataattgcc |
6133971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 69 - 252
Target Start/End: Complemental strand, 6052255 - 6052072
Alignment:
| Q |
69 |
aattcggcatgttgatagtgcaatagagggaagggtcctttgagatttcgcgccatatggtgcaaacattgtaagggcgaatgagaatatcgattgagtc |
168 |
Q |
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| T |
6052255 |
aattgggcatgttaatggtgcgaaagagaaaagggtctttggagattttgcgccatgtggtgcaaacattgtgagcgcgaacgagaagatcgattgcgtc |
6052156 |
T |
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| Q |
169 |
aagcttccggaaaatggataacactgcatctcgtggaagatctacccagtttcgttctccagaatcggttacttgtttcgaatt |
252 |
Q |
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| T |
6052155 |
gagcttccggaaaatggataagactgcatctcgtggaagatccagccagtttcgttctccagaatcgattattgatttcgaatt |
6052072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 74 - 252
Target Start/End: Complemental strand, 6045567 - 6045389
Alignment:
| Q |
74 |
ggcatgttgatagtgcaatagagggaagggtcctttgagatttcgcgccatatggtgcaaacattgtaagggcgaatgagaatatcgattgagtcaagct |
173 |
Q |
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| T |
6045567 |
ggcatgtcgatggtgtgatagaggaaaggatcctttgagattttgcgccatgtggtgcaaacgttatgagcgcgatggagaagatcgatcgtgtgaagtt |
6045468 |
T |
|
| Q |
174 |
tccggaaaatggataacactgcatctcgtggaagatctacccagtttcgttctccagaatcggttacttgtttcgaatt |
252 |
Q |
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| T |
6045467 |
tccggaaaatggttaatacgacatctgatggaagatccaaccagtttcgctctccagaatcgattattggtttcgaatt |
6045389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 91 - 227
Target Start/End: Complemental strand, 6037242 - 6037106
Alignment:
| Q |
91 |
atagagggaagggtcctttgagatttcgcgccatatggtgcaaacattgtaagggcgaatgagaatatcgattgagtcaagcttccggaaaatggataac |
190 |
Q |
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||||||| ||||||| || ||||||| |||||| | |||||||| || || |||||| |||||||| || | | ||||||| ||||||||||||| |
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| T |
6037242 |
atagaggaaagggtctttggagattttgcgccacgtagtgcaaaccctgggagtgcgaataagaatatcaatggtgggaagcttctggaaaatggataag |
6037143 |
T |
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| Q |
191 |
actgcatctcgtggaagatctacccagtttcgttctc |
227 |
Q |
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| T |
6037142 |
actgcatctcgtggaagatccagccagtttcgttctc |
6037106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 355 - 400
Target Start/End: Complemental strand, 19014199 - 19014154
Alignment:
| Q |
355 |
gttttcagttttaatccaagccattgaacttgtaattgccgcgtgt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
19014199 |
gttttcagttttaatccaagccattgaacttgtaattgccacgtgt |
19014154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 6040936 - 6040872
Alignment:
| Q |
74 |
ggcatgttgatagtgcaatagagggaagggtcctttgagatttcgcgccatatggtgcaaacatt |
138 |
Q |
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| T |
6040936 |
ggcatgtcgatggtgtgatagaggaaaggatcctttgagattttgcgccatgtggtgcaaacatt |
6040872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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