View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2964_high_26 (Length: 422)
Name: NF2964_high_26
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2964_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 414
Target Start/End: Original strand, 50061860 - 50062256
Alignment:
| Q |
18 |
aaattgtcctaaaagtaaatcatcagtaacaacaaccaagcagctgaagcaaagtacaagcaatcgctacaggaaataaagctttgaacttaaaaattag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50061860 |
aaattgtcctaaaagtaaatcatcagtaacaacaaccaagcagctgaagcaaagtacaagcaatcgctacaggaaataaagctttgaacttaaaaattag |
50061959 |
T |
|
| Q |
118 |
tattacaaagaaatccaaccttttgaagcttatagcgaattctaacttctggattaggagaatacatcttttgttttgccttcaaacgatagaatctgag |
217 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
50061960 |
tattacaaagaaatccaaccttttcaagcttatagcgaatcctaacttctggattaggagaatacatcttttgttttgccttcaaacgaaagaatctgag |
50062059 |
T |
|
| Q |
218 |
ctcatttagcttggcctttcttgannnnnnnnnnnnattctggttcttattcgcagaaccaatatcatcaggcttgtatagcgagaaccgtacaacatca |
317 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50062060 |
ctcatttagcttggcctttcttgattttttctttttattctggttcttattcgcagaaccaatatcatcaggcttgtatagcgagaaccgtacaacatca |
50062159 |
T |
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| Q |
318 |
ttttgggtcttcagttcaactgactcattacttgtgtatctggaaggtagccagtttccctgattaccatggcttcgaatgatatttgatctctgct |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50062160 |
ttttgggtcttcagttcaactgactcattacttgtgtatctggaaggtagccagtttccctgattaccatggcttcgaatgatatttgatctctgct |
50062256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 414
Target Start/End: Original strand, 44141282 - 44141679
Alignment:
| Q |
18 |
aaattgtcctaaaagtaaatcatcagtaacaacaaccaagcagctgaagcaaagtacaagcaatcgctacaggaaataaagctttgaacttaaaaattag |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44141282 |
aaattgtcctataagtaaatcatcagtaacaacaaccaagcagctgaagcaaagtacaagcaatcgctacaggaaataaagctttgaacttaaaaattag |
44141381 |
T |
|
| Q |
118 |
tattacaaagaaatccaaccttttgaagcttatagcgaattctaacttctggattaggagaatacatcttttgttttgccttcaaacgatagaatctgag |
217 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44141382 |
tattacaaagaaatccaaccttttcaagcttatagcgaatcctaacttctggattaggagaatacatcttttgttttgccttcaaacgaaagaatctgag |
44141481 |
T |
|
| Q |
218 |
ctcatttagcttggcctttcttga-nnnnnnnnnnnnattctggttcttattcgcagaaccaatatcatcaggcttgtatagcgagaaccgtacaacatc |
316 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44141482 |
ctcatttagcttggcctttcttgatttttttctttttattctggttcttattcgcagaaccaatatcatcaggcttgtatagcgagaaccgtacaacatc |
44141581 |
T |
|
| Q |
317 |
attttgggtcttcagttcaactgactcattacttgtgtatctggaaggtagccagtttccctgattaccatggcttcgaatgatatttgatctctgct |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44141582 |
attttgggtcttcagttcaactgactcattacttgtgtatctggaaggtagccagtttccctgattaccatggcttcgaatgatatttgatctctgct |
44141679 |
T |
|
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