View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2964_high_28 (Length: 421)
Name: NF2964_high_28
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2964_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 19 - 408
Target Start/End: Original strand, 3305992 - 3306381
Alignment:
| Q |
19 |
ccctctctccccaaaaatttaatacacagcccaattctcataatcagctttctgctgatcctaatctatgtgctacaaaccttaattcactgtacatttt |
118 |
Q |
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| T |
3305992 |
ccctctctccccaaaaatttaatacacagcccaattctcataatcagctttctgctgatcctaatctatgtgctacaaaccttaattcactgtacatttt |
3306091 |
T |
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| Q |
119 |
agaacattcaaatgaaaaatctgccatagcctttaagagctctagcaagttattttttagacaacttaatgatttttgcctcacatgtaggcactgtttt |
218 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3306092 |
agaacattcaaatgaaaaatctgtcatagcctttaagagctctagcaagttattttttagacaacttaatgatttttgcctcacatgtaggcactgtttt |
3306191 |
T |
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| Q |
219 |
tcaaatgcatctttttcctcatccaacctcttctctagttcaaccaaaactctcttctccattacaacctcaggaggatcattaatatcatcttcgcctc |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3306192 |
tcaaatgcatctttttcctcatccaacctcttctctagttcaaccaaaactctcttctccattgcaacctcaggaggatcattaatatcatcttcgcctc |
3306291 |
T |
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| Q |
319 |
tatttcgatcgaattcatctaatcctttctttttcttatatttgcactcccattgatcaaatcgtctgcttttgcgcgtatactcctttc |
408 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3306292 |
tattttgatcgaattcatctaatcctttctttttcttatatttgcactcccattgatcaaatcgtctgcttttgcgcgtatactcctttc |
3306381 |
T |
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