View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2964_high_3 (Length: 790)
Name: NF2964_high_3
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2964_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 537; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 161 - 775
Target Start/End: Original strand, 37023705 - 37024324
Alignment:
| Q |
161 |
aatgttgatattgccttgattaaacgtagataatgactagacgttactttaggtgttcgtttgtacctatctattcatttattcatgccatcaatattac |
260 |
Q |
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| T |
37023705 |
aatgttgatattgccttgattaaacgtagataatgactagacgttactttagttgttcgtttgtacctatctatttatt-attcatgacatccatattac |
37023803 |
T |
|
| Q |
261 |
--taacattta----acaagacaactcaaaaacgcataataattaacattttctttttaaaagaatattttgccagtttttgcgacatgtaaatctttaa |
354 |
Q |
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| T |
37023804 |
actaatatttatttaaccagacaactccaaaaatcataataattaacattttctttttaaaagaatattttgccagtttttgcgacatgtaaatctttaa |
37023903 |
T |
|
| Q |
355 |
aagtatcacacttgtctatatgcatggcccatatgatgcaatcttcacatgcatcactttacgttacgacatgatgatatggtatcaactcggtcatata |
454 |
Q |
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| T |
37023904 |
aagtatcacacttgtctatatgcatggcccatatgatgcaatcttcacatgcatcactttacgttacgacatgatgatatggtatcaactcggttatata |
37024003 |
T |
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| Q |
455 |
agtgctttattagcatggctttgtcttttttctgacatataatgtaaagctgagttagaagtattctattattaatataatatattttacgtgcaagttt |
554 |
Q |
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| T |
37024004 |
agtgctttattagcatggctttgtcttttttctgacatataatgtaaagctgagttagaagtattctattattaatataatatattttacgtgcaagttt |
37024103 |
T |
|
| Q |
555 |
ttcctaccattaattaacttactttatataatgttaatttgattagatacttggccgtgcaattggagggaaggtgactcgttctccaactggctgggac |
654 |
Q |
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| T |
37024104 |
ttcctaccattaattaacttactttatataatgttaatttgattagatacttggccgtgcaattggagggaaggtgactcgttctccaactggctgggac |
37024203 |
T |
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| Q |
655 |
attggtgtccgaaacataacgttatcaccctctttgccgtctcctttatcttctcttgaacttccaacgaagctttccattattcaatgccatagggatg |
754 |
Q |
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| T |
37024204 |
attggtgtccgaaacataacgttatcaccctctttgccatctcctttgtcttctcttgaacttccaacgaagctttccattattcaatgccatagggatg |
37024303 |
T |
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| Q |
755 |
aggtatgtgtacatctgcaat |
775 |
Q |
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| T |
37024304 |
aggtatgtgtacatctgcaat |
37024324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 37023547 - 37023654
Alignment:
| Q |
1 |
agctttaaaaacgacgtgtcagtgttttatggcgtaaagaaaataccttagaaattcttaggattggttctctctactttggcatatttaacgcactatc |
100 |
Q |
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| T |
37023547 |
agctttaaaaacgacgtgtcagtgttttatggcgtaaagaaaataccttagatattcttaggattggttctctctactttggaatatttaacgcactatc |
37023646 |
T |
|
| Q |
101 |
tatactca |
108 |
Q |
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|||||||| |
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| T |
37023647 |
tatactca |
37023654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 704 - 760
Target Start/End: Complemental strand, 35902640 - 35902584
Alignment:
| Q |
704 |
cttctcttgaacttccaacgaagctttccattattcaatgccatagggatgaggtat |
760 |
Q |
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| T |
35902640 |
cttctcttgatcttccaacaaagctttccataatcgaatgccacagggatgaggtat |
35902584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 591 - 662
Target Start/End: Complemental strand, 35902747 - 35902676
Alignment:
| Q |
591 |
atttgattagatacttggccgtgcaattggagggaaggtgactcgttctccaactggctgggacattggtgt |
662 |
Q |
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| T |
35902747 |
atttgataaggtacttggccgtgcattgggaggaaaggtgggtcgctctcctactggttgggacattggtgt |
35902676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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