View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2964_high_30 (Length: 419)
Name: NF2964_high_30
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2964_high_30 |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 19 - 409
Target Start/End: Original strand, 39289149 - 39289539
Alignment:
| Q |
19 |
ttttctccattggtaacattctagctttaacactatgtcgaagtgaggcggttttaagacttctttactggtttgttgtcaaaactatagggaagccttg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39289149 |
ttttctccattggtaacattctagctttaacactatgtcgaagtgaggcggttttaagacttctttactggtttgttgtcaaaactatagggaagccttg |
39289248 |
T |
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| Q |
119 |
tgtttctcttagaatcaaaacagcaataacttcatttcttcagagtcttggaggaattcatagtggctgcggcgtttcttcgatagcatggctagtttat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39289249 |
tgtttctcttagaatcaaaacagcaataacttcatttcttcaatgtattggaggaattcatagtggctgcggcgtttcttcgatagcatggctagtttat |
39289348 |
T |
|
| Q |
219 |
tctctcgtactcacgatcaaaagcaacgacaaaaccaattcttctccggagatactcggtgttgcattcgccatcctctcactcattacactctcttcgc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39289349 |
tctctcgtactcacgatcaaaagcaacgacaaaaccaattcttctccggagatactcggtgttgcattcgccatcctctcactcattacactctcttcgc |
39289448 |
T |
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| Q |
319 |
tcgcagcttttccagttattcgacatctccaccacaatgttttcgagcgaatccaccgtttttccggttggttagctcttatcctcctatg |
409 |
Q |
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| T |
39289449 |
ttgcagcttttccagttattcgacatctccaccacaatgttttcgagcgaatccaccgtttttccggttggttagctcttatccttctatg |
39289539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 409
Target Start/End: Original strand, 39296032 - 39296419
Alignment:
| Q |
19 |
ttttctccattggtaacattctagctttaacactatgtcgaagtgaggcggttttaagacttctttactggtttgttgtcaaaactatagggaagccttg |
118 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39296032 |
ttttctccattggtaacatcctagctttaacactatgtcgaagcgaggtggttttaagacttctttactggtttgttgtcaaaactatagggaaaccttg |
39296131 |
T |
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| Q |
119 |
tgtttctcttagaatcaaaacagcaataacttcatttcttcagagtcttggaggaattcatagtggctgcggcgtttcttcgatagcatggctagtttat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||| |||||||| |||||||||||||| ||| |
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| T |
39296132 |
tgtttctcttagaatcaaaacagcaataacttcattccttcaatgtattggaggaattcatagtggctgcggtgtttcttcaatagcatggctagtatat |
39296231 |
T |
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| Q |
219 |
tctctcgtactcacgatcaaaagcaacgacaaaaccaattcttctccggagatactcggtgttgcattcgccatcctctcactcattacactctcttcgc |
318 |
Q |
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|||||||| |||||||||| || |||||| ||| || ||||||| ||||| ||||| |||||||||||||| ||||| ||| |||||||| |||||| |
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| T |
39296232 |
tctctcgttctcacgatcacaaacaacgatgaaaaca---cttctccagagattctcggcgttgcattcgccattctctcgctccttacactcacttcgc |
39296328 |
T |
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| Q |
319 |
tcgcagcttttccagttattcgacatctccaccacaatgttttcgagcgaatccaccgtttttccggttggttagctcttatcctcctatg |
409 |
Q |
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|| |||||||||| ||||||| ||||| |||||||| ||||| |||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
39296329 |
tctcagcttttccttttattcgtcatcttcaccacaacgtttttgagcgaatccaccgttttgccggttggttagctcttatccttctatg |
39296419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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