View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2964_high_31 (Length: 415)
Name: NF2964_high_31
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2964_high_31 |
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Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 8 - 398
Target Start/End: Complemental strand, 4608934 - 4608545
Alignment:
| Q |
8 |
tgagccaagaaccatcagaagatgaagtaggagtaatgttaggaggttccacttcaacattcttcccttgttttgcaaaactccatcttctcttctcctt |
107 |
Q |
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| T |
4608934 |
tgagccaagaaccatcagaagatgaagtaggagtaatgttaggaggttccacttcaacattcttcccttgttttgcaaaactccatcttctcttctcctt |
4608835 |
T |
|
| Q |
108 |
tttgatgtcaggtgtcaatgaacctgaattaatgtcactgtggtccttctctttctccttcttcttgtttcctaacaaactcttaaaccatctactagct |
207 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4608834 |
tttgatgtcaggtgtcaatgaacctgaattgatgtcactgtggtccttctctttctccttcttcttgtttcctaacaaactcttaaaccatctactagct |
4608735 |
T |
|
| Q |
208 |
tttcccataactacttcttcacaagcaagaatctgaagtgtgagtgaatgagaaaaactatgtcaaatgttgaataaacgcaatacgagggaatttggta |
307 |
Q |
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| T |
4608734 |
tttcccataactacttcttcacaagcaagaatctgaagtgtgagtgaatgagaaaaactatgtcaaatgttgaataaacgcaatacgagggaatttggta |
4608635 |
T |
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| Q |
308 |
aaatttaaaaagagagagtgtggaatgacaaaacaagtggagtttagtgcaaaaatctaaagaatctaaacattaaggaaaatattattca |
398 |
Q |
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| T |
4608634 |
aaattt-aaaagagagagtgtggaatgacaaaacaagtggagtttagtgcaaaaatctaaagaatctaaacattaaggaaaatattattca |
4608545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 43315591 - 43315632
Alignment:
| Q |
176 |
ttcctaacaaactcttaaaccatctactagcttttcccataa |
217 |
Q |
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| T |
43315591 |
ttccaaacaaacccttcaaccatctactagcttttcccataa |
43315632 |
T |
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