View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2964_high_34 (Length: 385)
Name: NF2964_high_34
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2964_high_34 |
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Alignment Details
Target: chr2 (Bit Score: 150; Significance: 3e-79; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 6132993 - 6133162
Alignment:
| Q |
1 |
tactaaagtatgtgttgtaagtttagttatctatctaaaaatgtcaaatttcgtatttataaatcacacattgacattttataatataaacagaagcact |
100 |
Q |
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| T |
6132993 |
tactaaagtatgtgtggtaagtttagttatctatctaaaaatttcaaatttcgtatttataaatcacatattgacattttataatataaacagaagcact |
6133092 |
T |
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| Q |
101 |
acaaactagtctgtattacaaacacgtgcaagttttcacttttggcgataaatatatcacaaacataaaa |
170 |
Q |
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| T |
6133093 |
acaaactagtatgtattacaaacacgtgcaagttttcacttttggcgataactatatcacaaacataaaa |
6133162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 262 - 385
Target Start/End: Original strand, 6133391 - 6133519
Alignment:
| Q |
262 |
ctaaaatatcactcaccctttaattaaggatgtgtttggtatgctataaaataa-----ggaattggatataacaactaatgtgacttaaaaataaataa |
356 |
Q |
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| T |
6133391 |
ctaaaatatcactaaccctttaattaaggatgtttttggtatgctataaaataaaaaaaggaattggacataacaacgaatgtgaattaaaaataaataa |
6133490 |
T |
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| Q |
357 |
gaaagagaaaatgaaacatactacgaatt |
385 |
Q |
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| T |
6133491 |
gaaagagaaaatgaaacatactacgaatt |
6133519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 169 - 254
Target Start/End: Original strand, 6133267 - 6133352
Alignment:
| Q |
169 |
aaggggaacacattttttgtcctttcttttcaacacaaacacacaattgatggcgttcagtctcacaattttggcaattttgccag |
254 |
Q |
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| T |
6133267 |
aaggggaacacatattttgtcctttcttttcaacacaaacacacaattgatggcgttcagtctcacaattttggcaattttgccag |
6133352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 170
Target Start/End: Complemental strand, 6043155 - 6043027
Alignment:
| Q |
40 |
aatgtcaaatttcgtatttataaatcacacattgacattttataatataaacagaagcactacaaactagtctgtattacaaacacgtgcaagttttcac |
139 |
Q |
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|||| ||||||| ||||||||||| |||||| |||||||||| ||||||| |||||| | |||||| | |||||| |||||||| | || ||||||| |
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| T |
6043155 |
aatgccaaattttgtatttataaaccacacaggaacattttata--ataaacaaaagcaccataaactaatttgtattgcaaacacgagaaaattttcac |
6043058 |
T |
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| Q |
140 |
ttttggcgataaatatatcacaaacataaaa |
170 |
Q |
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| T |
6043057 |
tttcggcgataactaaatcacacaaataaaa |
6043027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 6046417 - 6046381
Alignment:
| Q |
32 |
tatctaaaaatgtcaaatttcgtatttataaatcaca |
68 |
Q |
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| T |
6046417 |
tatctaaaaatgtcaaattttgtatttatatatcaca |
6046381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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