View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2964_high_35 (Length: 384)
Name: NF2964_high_35
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2964_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 14 - 360
Target Start/End: Complemental strand, 40113615 - 40113269
Alignment:
| Q |
14 |
atcacatctcatggctttactacaagcaaaagtgacccctctttgttcatatatgcttctggtgctatcattgcctacttcttggtatatgttgatgatt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40113615 |
atcacatctcatggctttactacaagcaaaagtgacccctctttgttcatatatgcttctggtgctatcattgcctacttcttggtatatgttgatgatt |
40113516 |
T |
|
| Q |
114 |
tgctgttaacaggtaatgatgcagaattcctacacaacttcattcaatctttatctaaaactttctctctcaagaacatggggacacctcactacttctt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40113515 |
tgctgttaacaggtaatgatgcagaattcctacacaacttcattcaatctttatctaaaactttctctctcaagaacatggggacacctcactacttctt |
40113416 |
T |
|
| Q |
214 |
aggcattgagttaattcccacaagcaaaggattgttcttatctcaacataaatttattagaaaaattcttgagaaatttgatatggatggtgcaaaacca |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40113415 |
aggcattgagttaattcccacaagcaaaggattgttcttatctcaacataaatttattagagaaattcttgagaaatttgatatggatggtgcaaaacca |
40113316 |
T |
|
| Q |
314 |
gcgcccacacctttgtcaccaacagctatcctcaccattcatgatgg |
360 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40113315 |
gcgcccacacctttgtcaccaacagctatcctcaccattcatgatgg |
40113269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 14 - 360
Target Start/End: Original strand, 6406618 - 6406964
Alignment:
| Q |
14 |
atcacatctcatggctttactacaagcaaaagtgacccctctttgttcatatatgcttctggtgctatcattgcctacttcttggtatatgttgatgatt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6406618 |
atcacatctcatggctttactacaagcaaaagtgacccctctttgttcatatatgcttctggtgctatcattgcctacttcttggtatatgttgatgatt |
6406717 |
T |
|
| Q |
114 |
tgctgttaacaggtaatgatgcagaattcctacacaacttcattcaatctttatctaaaactttctctctcaagaacatggggacacctcactacttctt |
213 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6406718 |
tgctgttaacaggtaatgatgcagaattcctacacaacttcattcaatctttatctaaaactttctctctcaagaacatggggacacctcactacttctt |
6406817 |
T |
|
| Q |
214 |
aggcattgagttaattcccacaagcaaaggattgttcttatctcaacataaatttattagaaaaattcttgagaaatttgatatggatggtgcaaaacca |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6406818 |
aggcattgagttaattcccacaagcaaaggattgttcttatctcaacataaatttattagagaaattcttgagaaatttgatatggatggtgcaaaacca |
6406917 |
T |
|
| Q |
314 |
gcgcccacacctttgtcaccaacagctatcctcaccattcatgatgg |
360 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6406918 |
gcgcccacacctttgtcaccaacagctatcctcaccattcatgatgg |
6406964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 159
Target Start/End: Complemental strand, 654743 - 654596
Alignment:
| Q |
12 |
tcatcacatctcatggctttactacaagcaaaagtgacccctctttgttcatatatgcttctggtgctatcattgcctacttcttggtatatgttgatga |
111 |
Q |
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|||||||||| | ||| || ||||| ||||| ||||||| ||| |||| |||||| | || ||| | |||||||||||||||||||| ||||||||||| |
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| T |
654743 |
tcatcacatcccctggtttcactaccagcaagagtgacctctccctgtttatatatacctcaggtccaatcattgcctacttcttggtctatgttgatga |
654644 |
T |
|
| Q |
112 |
tttgctgttaacaggtaatgatgcagaattcctacacaacttcattca |
159 |
Q |
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| | || |||||||||||||||| ||||| |||||||||| ||||| |
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| T |
654643 |
tcttttgctaacaggtaatgatgcccaattcttacacaactttattca |
654596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 3019035 - 3019151
Alignment:
| Q |
20 |
tctcatggctttactacaagcaaaagtgacccctctttgttcatatatgcttctggtgctatcattgcctacttcttggtatatgttgatgatttgctgt |
119 |
Q |
| |
|
||||||||||| ||||||||| ||||||| || || | ||||||||||| || ||| ||| |||| ||||| ||||| |||||||||||| | || | |
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| T |
3019035 |
tctcatggcttcactacaagccaaagtgatccttcgctcttcatatatgcctcaggtactactcttgcatactttttggtttatgttgatgatcttcttt |
3019134 |
T |
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| Q |
120 |
taacaggtaatgatgca |
136 |
Q |
| |
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|||| || ||||||||| |
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| T |
3019135 |
taacgggaaatgatgca |
3019151 |
T |
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