View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2964_high_42 (Length: 357)
Name: NF2964_high_42
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2964_high_42 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 13 - 340
Target Start/End: Complemental strand, 51035938 - 51035611
Alignment:
| Q |
13 |
tcatcacttacatgattctttgattcaggaatgcatgcatggtttgctgcaactgctgatactcgctatgctgtgattgcgatgggccatagacaatgat |
112 |
Q |
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| T |
51035938 |
tcatcacttacatgattctttgattcaggaatgcatgcatggtttgctgcaactgctgatactcgctatgctgtgattgcgatgggccatagacaatgat |
51035839 |
T |
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| Q |
113 |
aagtggcaggctcgagttgacagtataaagcctgtttttgaaggtattataatgtattgtttgagaaattcctttttcctttcacgtgttaattgctttg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51035838 |
aagtggcaggctcgagttgacagtataaagcctgtttttgaaggtattataatgtattgtttgagaaattcctttttcctttcacgtgttaattgctttg |
51035739 |
T |
|
| Q |
213 |
ctttagttattgctcctaccacttcattcagatttatatataatggaatcactgttctggtcatataacccagtaatcataccagttttagtgtattatg |
312 |
Q |
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| T |
51035738 |
ctttagttattgctcctaccacttcattcagatttatatataatggaatcactgttctggtcatataacccagtaatcataccagttttagtgtattatg |
51035639 |
T |
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| Q |
313 |
atttcataaatcaaagttaggatttcat |
340 |
Q |
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| T |
51035638 |
atttcataaatcaaagttaggatttcat |
51035611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 87 - 269
Target Start/End: Complemental strand, 51043677 - 51043496
Alignment:
| Q |
87 |
gattgcgatgggccatagacaatgataagtggcaggctcgagttgacagtataaagcctgtttttgaaggtattataatgtattgtttgagaaattcctt |
186 |
Q |
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| T |
51043677 |
gatttcgatgggccatagacaacgataagtggcaggctcgagttgacagtattaagccagtttttgaaggtacgatgatgtattgtttctgaaatttctt |
51043578 |
T |
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| Q |
187 |
tttcctttcacgtgttaattgctttgctttagttattgctcctaccacttcattcagatttatatataatggaa-tcactgttc |
269 |
Q |
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| T |
51043577 |
gt--atttcacgtgttttttgctttgctttagttattgctcctactatttcatttagatttatataaaatggaagtcactgttc |
51043496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 51043865 - 51043787
Alignment:
| Q |
14 |
catcacttacatgattctttgattcaggaatgcatgcatggtttgctgcaactgctgatactcgctatgctgtgattgc |
92 |
Q |
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|||||||||||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||| |
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| T |
51043865 |
catcacttacattattccttgattcaggaatgcatgcatggtttgctgcagctgttgatactcgctatgctgtggttgc |
51043787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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