View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2964_high_44 (Length: 353)

Name: NF2964_high_44
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2964_high_44
NF2964_high_44
[»] chr5 (2 HSPs)
chr5 (166-204)||(38685296-38685334)
chr5 (171-204)||(10948766-10948799)
[»] chr4 (1 HSPs)
chr4 (159-199)||(18814805-18814845)
[»] chr6 (1 HSPs)
chr6 (161-198)||(24105283-24105320)
[»] chr3 (1 HSPs)
chr3 (165-202)||(2304055-2304092)


Alignment Details
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 38685296 - 38685334
Alignment:
Q  166 catgacactgacacatgtggttatattcaattacttcca 204  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  38685296 catgacactgacacatgtggttacattcaattacttcca 38685334  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 204
Target Start/End: Original strand, 10948766 - 10948799
Alignment:
Q  171 cactgacacatgtggttatattcaattacttcca 204  Q
    |||| |||||||||||||||||||||||||||||    
T  10948766 cactaacacatgtggttatattcaattacttcca 10948799  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 18814805 - 18814845
Alignment:
Q  159 acaccaacatgacactgacacatgtggttatattcaattac 199  Q
    ||||||||| |||||| ||||||||||||||||||||||||    
T  18814805 acaccaacacgacactaacacatgtggttatattcaattac 18814845  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 198
Target Start/End: Original strand, 24105283 - 24105320
Alignment:
Q  161 accaacatgacactgacacatgtggttatattcaatta 198  Q
    ||||||||||||||||||||| || |||||||||||||    
T  24105283 accaacatgacactgacacatttgattatattcaatta 24105320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 202
Target Start/End: Original strand, 2304055 - 2304092
Alignment:
Q  165 acatgacactgacacatgtggttatattcaattacttc 202  Q
    |||||| |||||||||||||||||| ||||||||||||    
T  2304055 acatgatactgacacatgtggttatgttcaattacttc 2304092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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