View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2964_high_48 (Length: 333)

Name: NF2964_high_48
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2964_high_48
NF2964_high_48
[»] chr6 (13 HSPs)
chr6 (1-314)||(6505502-6505815)
chr6 (26-311)||(6526419-6526701)
chr6 (16-311)||(6515950-6516245)
chr6 (25-311)||(13035591-13035874)
chr6 (1-104)||(6465355-6465458)
chr6 (25-311)||(6472892-6473175)
chr6 (35-210)||(6520514-6520695)
chr6 (2-102)||(6528216-6528316)
chr6 (28-192)||(6496722-6496886)
chr6 (2-192)||(6461786-6461976)
chr6 (26-90)||(6523440-6523504)
chr6 (221-311)||(1841738-1841828)
chr6 (7-101)||(6457401-6457495)
[»] chr7 (1 HSPs)
chr7 (24-210)||(9665246-9665438)
[»] chr4 (1 HSPs)
chr4 (24-210)||(13536270-13536462)
[»] chr1 (3 HSPs)
chr1 (39-90)||(35231500-35231551)
chr1 (27-90)||(35243140-35243203)
chr1 (172-200)||(35231399-35231427)


Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 6505502 - 6505815
Alignment:
Q  1 ttagacccttgttgagtaataagtcctccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6505502 ttagacccttgttgagtaataagtcctccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttca 6505601  T
Q  101 aaaaacttctaaccttttcaatggcttcaaagaagaaaacctcttccgctaccaatgcaagcctagctgctcttgcaatcaattttccataaaaataaga 200  Q
    ||||  |||| || |||||||| || |||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6505602 aaaagtttcttactttttcaatagcatcaaagaagaaaacctcttcagctatcaatgcaagcctagctgctcttgcaattaattttccataaaaataaga 6505701  T
Q  201 cgatgttgtttgttttgttgcagatgagtttaaatcttcaacatctttagaaagtgatgaaacaatttcatcgcgtgattcgtcttttacacctttgctt 300  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6505702 cgattttgtttgttttgttgcagatgagtttaaaccttcaacatctttagaaagtgatgaaacaatttcattgcgtgattcgtcttttacacctttgctt 6505801  T
Q  301 gagtgccaagtcat 314  Q
    ||||||||||||||    
T  6505802 gagtgccaagtcat 6505815  T

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Target: chr6; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 26 - 311
Target Start/End: Original strand, 6526419 - 6526701
Alignment:
Q  26 ctccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaaaaaacttctaaccttttcaatggc 125  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||| |||  |||  |    
T  6526419 ctccccattttttatcataaagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaaatactttctaacttttggaatcac 6526518  T
Q  126 ttcaaagaagaaaacctcttccgctaccaatgcaagcctagctgctcttgcaatcaattttccataaaaataagacgatgttgtttgttttgttgcagat 225  Q
     |||| |||  ||||||||||||||| ||||||||| || || |||||||||||||||||||||||||||||||| ||| |||||| | |||||   |||    
T  6526519 atcaaggaaacaaacctcttccgctatcaatgcaagtcttgcagctcttgcaatcaattttccataaaaataagatgattttgtttttattgtt---gat 6526615  T
Q  226 gagtttaaatcttcaacatctttagaaagtgatgaaacaatttcatcgcgtgattcgtcttttacacctttgcttgagtgccaagt 311  Q
    || || |   |||||||||| ||| |||||| ||||||||||||||| ||  || | ||| | |||||||||||||| ||||||||    
T  6526616 gaattcagtccttcaacatccttacaaagtgctgaaacaatttcatcacgcaatccatctctcacacctttgcttgaatgccaagt 6526701  T

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Target: chr6; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 16 - 311
Target Start/End: Complemental strand, 6516245 - 6515950
Alignment:
Q  16 gtaataagtcctccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaaaaaacttctaacct 115  Q
    ||||||| ||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| || ||||| |||||||||||||| ||||| || |    
T  6516245 gtaataattcctccccattttttgtcatacagaaatccatttccgttaaaagttccatcaagccatggttcaattgtttccttcaaaaagcttctgactt 6516146  T
Q  116 tttcaatggcttcaaagaagaaaacctcttccgctaccaatgcaagcctagctgctcttgcaatcaattttccataaaaataagacgatgttgtttgttt 215  Q
    ||| ||| || |||| ||| ||||  ||||| |||| |||||| | ||| ||||||||||||||||||| |||||| || ||||| || ||  ||  | |    
T  6516145 tttgaatagcgtcaacgaaaaaaaattcttcagctatcaatgctaaccttgctgctcttgcaatcaattgtccatagaagtaagatgaagtaattgatgt 6516046  T
Q  216 tgttgcagatgagtttaaatcttcaacatctttagaaagtgatgaaacaatttcatcgcgtgattcgtcttttacacctttgcttgagtgccaagt 311  Q
    | |||| ||||| |||||| |||||||||||||  |||| || ||||||||||||||  ||||||| ||||||| |||||||||||| ||||||||    
T  6516045 tattgctgatgaatttaaaccttcaacatcttttaaaagcgacgaaacaatttcatcatgtgattcttcttttatacctttgcttgaatgccaagt 6515950  T

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Target: chr6; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 25 - 311
Target Start/End: Complemental strand, 13035874 - 13035591
Alignment:
Q  25 cctccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaaaaaacttc-taaccttttcaatg 123  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||  ||||| | ||  ||  |||     
T  13035874 cctccccattttttatcatagagaaatccatttccattaaaagttccatcaagccaaggctcaatggattccttc-aagtacttcttcacaattggaatt 13035776  T
Q  124 gcttcaaagaagaaaacctcttccgctaccaatgcaagcctagctgctcttgcaatcaattttccataaaaataagacgatgttgtttgttttgttgcag 223  Q
    || |||| | |    |||||||| | || |||||| | ||| || |||||||| ||||||||||||||||| ||||| ||||| ||   | || | |  |    
T  13035775 gcatcaaggtaattcacctcttcagttatcaatgctaaccttgcagctcttgctatcaattttccataaaagtaagatgatgtcgt---tgttatcggtg 13035679  T
Q  224 atgagtttaaatcttcaacatctttagaaagtgatgaaacaatttcatcgcgtgattcgtcttttacacctttgcttgagtgccaagt 311  Q
    |||| |||| | ||||||||||||| ||||| | |||||||||||  ||  ||||||| |||||||||||||||||||  ||||||||    
T  13035678 atgactttagaccttcaacatctttcgaaagagctgaaacaattttgtcatgtgattcttcttttacacctttgcttgtatgccaagt 13035591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 6465355 - 6465458
Alignment:
Q  1 ttagacccttgttgagtaataagtcctccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttca 100  Q
    |||||||||||||  |||| || |||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6465355 ttagacccttgtttggtaacaattcctccccattttccatcatagagaaatccatttccattaaaagttccatcaagccaaggctcaatagtttccttca 6465454  T
Q  101 aaaa 104  Q
    ||||    
T  6465455 aaaa 6465458  T

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Target: chr6; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 25 - 311
Target Start/End: Complemental strand, 6473175 - 6472892
Alignment:
Q  25 cctccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaaaaaacttctaaccttttcaatgg 124  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||  ||| |||||||||| |  |  | ||  ||  ||| |    
T  6473175 cctccccattttttatcatagagaaatccatttccattaaatgttccatcgagccaaggctcggtggattccttcaaatatttcttcacaattggaattg 6473076  T
Q  125 cttcaaagaagaaaacctcttccgctaccaatgcaagcctagctgctcttgcaatcaattttccataaaaataagacgatgttgtttgttttgttgcaga 224  Q
    | |||| | |    |||||||| |||| |||||| | ||| || || ||||| ||||||||||||||||| ||||| |||| |||   | || | |  ||    
T  6473075 catcaaggtaattcacctcttcggctatcaatgctaacctcgcagcccttgctatcaattttccataaaagtaagatgatgctgt---tgttatcggtga 6472979  T
Q  225 tgagtttaaatcttcaacatctttagaaagtgatgaaacaatttcatcgcgtgattcgtcttttacacctttgcttgagtgccaagt 311  Q
    ||| |||| |   ||||||||||| ||||| | |||||||||||| ||  ||||||| |||||||||||||||||||| ||||||||    
T  6472978 tgactttagactctcaacatcttttgaaagagctgaaacaatttcgtcatgtgattcttcttttacacctttgcttgaatgccaagt 6472892  T

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Target: chr6; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 35 - 210
Target Start/End: Complemental strand, 6520695 - 6520514
Alignment:
Q  35 ttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaaaaa------acttctaaccttttcaatggcttc 128  Q
    |||||||||||||||| |||||| || |||||||||||||||||||||||||||| ||||||||||| ||      | |  ||||||||  |||    ||    
T  6520695 ttttatcatatagaaaaccattttcactaaaagttccatcaagccaaggctcaatagtttccttcaagaacatcttaatcttaacctttggaatcaaatc 6520596  T
Q  129 aaagaagaaaacctcttccgctaccaatgcaagcctagctgctcttgcaatcaattttccataaaaataagacgatgttgtt 210  Q
    ||||| |||||||||||| ||||  | ||| | ||| || ||||| |||||||| ||||||||| |||||||||||||||||    
T  6520595 aaagacgaaaacctcttcagctattattgctaaccttgcagctctagcaatcaactttccataagaataagacgatgttgtt 6520514  T

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Target: chr6; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 6528216 - 6528316
Alignment:
Q  2 tagacccttgttgagtaataagtcctccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaa 101  Q
    |||| |||||||  |||||||  |||||||||||||||||||| ||||||||||| || || ||||||||||||||||||||||||||  | ||||||||    
T  6528216 tagagccttgttttgtaataatccctccccattttttatcatagagaaatccattacctttgaaagttccatcaagccaaggctcaatcatctccttcaa 6528315  T
Q  102 a 102  Q
    |    
T  6528316 a 6528316  T

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Target: chr6; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 28 - 192
Target Start/End: Original strand, 6496722 - 6496886
Alignment:
Q  28 ccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaaaaaacttc-taaccttttcaatggct 126  Q
    |||||||| | ||| | |||||||||||| ||||| ||||||||||| | |||||||||||||||||| ||| ||||||||| ||||||||  |||  |     
T  6496722 ccccatttatcatcttgtagaaatccattcccatttaaagttccatctaaccaaggctcaatggtttctttc-aaaaacttcttaacctttggaatcaca 6496820  T
Q  127 tcaaagaagaaaacctcttccgctaccaatgcaagcctagctgctcttgcaatcaattttccataa 192  Q
    || ||| |  |||||||||| |||| |||||||| ||| || || ||| |||||||||| ||||||    
T  6496821 tctaagtatgaaacctcttcggctatcaatgcaaacctcgccgcccttccaatcaatttaccataa 6496886  T

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Target: chr6; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 192
Target Start/End: Complemental strand, 6461976 - 6461786
Alignment:
Q  2 tagacccttgttgagtaataagtcctccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaa 101  Q
    ||||||||||||  |||| ||  || |||||||| | ||| | |||||||||||| ||||| ||||||||||| | ||||||||||||||||| |||  |    
T  6461976 tagacccttgttcggtaacaatgccaccccatttatcatcttgtagaaatccattcccatttaaagttccatctaaccaaggctcaatggttt-ctttta 6461878  T
Q  102 aaaacttc-taaccttttcaatggcttcaaagaagaaaacctcttccgctaccaatgcaagcctagctgctcttgcaatcaattttccataa 192  Q
    |||||||| ||||||||  |||  | || ||| |  |||||||||| |||| |||||||| ||| || || ||| |||||||||| ||||||    
T  6461877 aaaacttcttaacctttggaatcacatctaagtaagaaacctcttcagctatcaatgcaaacctcgccgcccttccaatcaatttaccataa 6461786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 6523440 - 6523504
Alignment:
Q  26 ctccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatg 90  Q
    |||||||||| | |||||||||||||||||||   || |||||||||||||||||||||||||||    
T  6523440 ctccccatttctgatcatatagaaatccattttatttgaaagttccatcaagccaaggctcaatg 6523504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 221 - 311
Target Start/End: Complemental strand, 1841828 - 1841738
Alignment:
Q  221 cagatgagtttaaatcttcaacatctttagaaagtgatgaaacaatttcatcgcgtgattcgtcttttacacctttgcttgagtgccaagt 311  Q
    |||||||||| ||| ||||||||| |||  |||| | |||||||||||||||  |  |||| |||||||||||||||||||| ||||||||    
T  1841828 cagatgagttcaaaccttcaacatatttcaaaagagctgaaacaatttcatcatgaaattcttcttttacacctttgcttgaatgccaagt 1841738  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 101
Target Start/End: Original strand, 6457401 - 6457495
Alignment:
Q  7 ccttgttgagtaataagtcctccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaa 101  Q
    |||||||  ||||| | |||||||||||||  |||||| ||||| |||||| | |||||||||||||  | ||| ||||| || |||||||||||    
T  6457401 ccttgtttggtaatgattcctccccattttccatcataaagaaaaccattttcgttaaaagttccattcaaccatggctcgatcgtttccttcaa 6457495  T

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Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 24 - 210
Target Start/End: Complemental strand, 9665438 - 9665246
Alignment:
Q  24 tcctccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaaaaaacttc-------taacctt 116  Q
    |||||||||||| | |||||| |||||||||||| | || ||||||||||||| ||| || ||||| ||||| ||| |||||||||       |||| ||    
T  9665438 tcctccccatttctgatcatacagaaatccattttctttgaaagttccatcaaaccacggttcaatagtttctttc-aaaaacttcttaatcttaacatt 9665340  T
Q  117 ttcaatggcttcaaagaagaaaacctcttccgctaccaatgcaagcctagctgctcttgcaatcaattttccataaaaataagacgatgttgtt 210  Q
    |  ||     |||||||| ||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||| || || |||||||||    
T  9665339 tggaaccatatcaaagaaaaaaacgtcttcagctatcaatgcaagcctagctgctcttgcaatcaattttccataaaagtatgaagatgttgtt 9665246  T

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Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 24 - 210
Target Start/End: Complemental strand, 13536462 - 13536270
Alignment:
Q  24 tcctccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaaaaaacttc-------taacctt 116  Q
    |||||||||||| | |||||| |||||||||||| | || ||||||||||||| ||| || ||||| ||||| ||| |||||||||       |||| ||    
T  13536462 tcctccccatttctgatcatacagaaatccattttctttgaaagttccatcaaaccacggttcaatagtttctttc-aaaaacttcttaatcttaacatt 13536364  T
Q  117 ttcaatggcttcaaagaagaaaacctcttccgctaccaatgcaagcctagctgctcttgcaatcaattttccataaaaataagacgatgttgtt 210  Q
    |  ||     |||||||| ||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||| || || |||||||||    
T  13536363 tggaaccatatcaaagaaaaaaacgtcttcagctatcaatgcaagcctagctgctcttgcaatcaattttccataaaagtatgaagatgttgtt 13536270  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 35231551 - 35231500
Alignment:
Q  39 atcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatg 90  Q
    ||||||||||||||||||| | || | || ||||||||||||||||||||||    
T  35231551 atcatatagaaatccattttctttgatagctccatcaagccaaggctcaatg 35231500  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 90
Target Start/End: Complemental strand, 35243203 - 35243140
Alignment:
Q  27 tccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatg 90  Q
    |||||||| || |||||||| |||| ||||| | || |||||||||||||||||| ||||||||    
T  35243203 tccccattcttgatcatatacaaattcattttctttgaaagttccatcaagccaaagctcaatg 35243140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 200
Target Start/End: Complemental strand, 35231427 - 35231399
Alignment:
Q  172 cttgcaatcaattttccataaaaataaga 200  Q
    |||||||||||||||||||||||||||||    
T  35231427 cttgcaatcaattttccataaaaataaga 35231399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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