View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2964_high_52 (Length: 312)

Name: NF2964_high_52
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2964_high_52
NF2964_high_52
[»] chr1 (1 HSPs)
chr1 (1-297)||(49017690-49017986)


Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 49017986 - 49017690
Alignment:
Q  1 tctttgtttcgactaacatcggattatgatcnnnnnnngccttaggcatccgaatttcatcaatctttaccaccatccatataccttgtgcaaaatcaaa 100  Q
    |||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  49017986 tctttgtttcgactaacatcggattatgatctttttttgccttaggcatccgaatttcatcaatctttcccaccatccatataccttgtgcaaaatcaaa 49017887  T
Q  101 gcttattataggaagctcgcgagttagtccttcgaacaacagttgattcacaccattgatgaaatcaacaagtttcagtgccatatagtcttcagatgac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49017886 gcttattataggaagctcgcgagttagtccttcgaacaacagttgattcacaccattgatgaaatcaacaagtttcagtgccatatagtcttcagatgac 49017787  T
Q  201 ttcacattcacttccactggttccagaacctcttgttcaagctgaaaatgccgatctataccagctttcattgctttactcttccaacttcctcctc 297  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49017786 ttcacattcacttccattggttccagaacctcttgttcaagctgaaaatgccgatctataccagctttcattgctttactcttccaacttcctcctc 49017690  T

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