View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2964_high_55 (Length: 307)
Name: NF2964_high_55
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2964_high_55 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 1161935 - 1162214
Alignment:
| Q |
18 |
taaacatcaattcaaaattttaaacataaacgggaacaactatttaacttaaacaacaacttaattgagtatcttgtatgtgagtgactcgaaaaaatca |
117 |
Q |
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| T |
1161935 |
taaacatcaattaaaaattttaaacataaccgggaacaactatgtaagttaaacaacaacttaattgagtatcttgtatgtgagtgactcgaaaaattca |
1162034 |
T |
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| Q |
118 |
ttgacagtggaactac----acgatcctcaaaagtaagaaatattttactaaaataaatcatattaaaagtgtaataaatataatctcaggtcctgcaaa |
213 |
Q |
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| T |
1162035 |
ttgacagtcgaactacccacacgatcctcaaaattaagaaatattttactaaaataaatcataataaaggtgtaataaatataatctcaggtcctgcaaa |
1162134 |
T |
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| Q |
214 |
gttgatcgagaaacaagtaatctcatgtccagccataatctatctaaatttgaagggaaaaatttagatataaagatagta |
294 |
Q |
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| T |
1162135 |
gttgatcgagaaacaagtaatctcaggtccagccataatctatctaaatttgaaggg-aaaatttagatataaagatagta |
1162214 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 115
Target Start/End: Complemental strand, 25329178 - 25329086
Alignment:
| Q |
24 |
tcaattcaaaattttaaacataaacgggaacaactatttaactta-aacaacaacttaattgagtatcttgtatgtgagtgactcgaaaaaat |
115 |
Q |
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| T |
25329178 |
tcaattcaaaattgcaaacataactgaggacaactatataacttggaacaacaacttgatcgagtatcttgcatgtgagagactcgacaaaat |
25329086 |
T |
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