View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2964_high_60 (Length: 282)
Name: NF2964_high_60
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2964_high_60 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 20 - 266
Target Start/End: Complemental strand, 18931432 - 18931186
Alignment:
| Q |
20 |
acttgaagaactagaagttctactggaaccaagggttgatttatatgatcttgctgcaaatgaattcgacttcagagagagttttgtaaatatgggttgg |
119 |
Q |
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| T |
18931432 |
acttgaagaactagaagttctactggaaccaagggttgatttatatgatcttgctgcaaatgaattcgacttcagagtgagttttgtaaatatgggttgg |
18931333 |
T |
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| Q |
120 |
atggaatatttctatgcagaaaagaaacctatctacgccgagcttgtaaaagaattttggatgagtgcgagggttaataacgggagcatctgtggttatg |
219 |
Q |
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| T |
18931332 |
atggaatatttctatgcagaaaagaaacctatctacaccgagcttgtaaaagaattttggatgagtgcaagggttgataatgggagcatctatggttatg |
18931233 |
T |
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| Q |
220 |
ttcaaggaaaggtggttataatctctttggaatttttgccacaggtt |
266 |
Q |
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| T |
18931232 |
ttcaaggaaaggtggttataatctctttggaatttttgccacaggtt |
18931186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 22 - 266
Target Start/End: Complemental strand, 36845738 - 36845494
Alignment:
| Q |
22 |
ttgaagaactagaagttctactggaaccaagggttgatttatatgatcttgctgcaaatgaattcgacttcagagagagttttgtaaatatgggttggat |
121 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| | |||||| ||||||||||||| |
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| T |
36845738 |
ttgaagaactagaagttctactggaaccaagggttgacctatatgatcttgctgcaaatgaatttgacttcagagaaaattttgtggatatgggttggat |
36845639 |
T |
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| Q |
122 |
ggaatatttctatgcagaaaagaaacctatctacgccgagcttgtaaaagaattttggatgagtgcgagggttaataacgggagcatctgtggttatgtt |
221 |
Q |
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|||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||| |
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| T |
36845638 |
ggaatacttctgtgcagaaaagaaacctatctacaccgagcttgtaaaagaattttggatgagtgcaagggttgataatgggagcatctgtggttatgtt |
36845539 |
T |
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| Q |
222 |
caaggaaaggtggttataatctctttggaatttttgccacaggtt |
266 |
Q |
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| T |
36845538 |
caaggaaaggtggctataatctctttggaatttttgccacaggtt |
36845494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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