View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2964_high_71 (Length: 236)
Name: NF2964_high_71
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2964_high_71 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 36463996 - 36464201
Alignment:
| Q |
17 |
tggatatgaaataattaagcatgatatatcagtatttgtttcctactatacctttttcctttgtatattggtattagtatgattatcattgactgattcc |
116 |
Q |
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| T |
36463996 |
tggatatggaataattaagcatgatatatcagtatttgtttcctactatacctttttcctttgtatattggtattagtatgattatcattgactgattcc |
36464095 |
T |
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| Q |
117 |
cctgcttgaaggtcaagttcaacatcttcaatccttctaatatctgagaaagaattttagcatgacatgtatatatggttacaatggtctgtattagttg |
216 |
Q |
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| T |
36464096 |
cctgcttgaaggtcaagttcaacatcttcaatccttctaatatctgagaaagaattttagcatgacatgtatatatggttacaatggtctgtattagttg |
36464195 |
T |
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| Q |
217 |
acatgt |
222 |
Q |
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|||||| |
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| T |
36464196 |
acatgt |
36464201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 198
Target Start/End: Original strand, 36473272 - 36473402
Alignment:
| Q |
65 |
tacctttttcctttgtatattggtattagtatgattatcattgactgattcccctgcttgaaggtcaagttcaacatcttcaatccttctaatatctgag |
164 |
Q |
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||||||||| ||| ||| ||||||||| || ||||| |||||||||||||||||| |||||| |||||| | ||||||| || |||||||||||| |
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| T |
36473272 |
taccttttttcttggtagattggtattggtttgattttcattgactgattcccctatttgaagatcaagtgtagcatcttctgtc---ctaatatctgag |
36473368 |
T |
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| Q |
165 |
aaagaattttagcatgacatgtatatatggttac |
198 |
Q |
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| || | ||||||||||||||||||||||||| |
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| T |
36473369 |
gcacaaatatagcatgacatgtatatatggttac |
36473402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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