View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2964_high_8 (Length: 669)

Name: NF2964_high_8
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2964_high_8
NF2964_high_8
[»] chr8 (6 HSPs)
chr8 (11-362)||(16622019-16622373)
chr8 (461-665)||(16622474-16622681)
chr8 (584-648)||(12136535-12136600)
chr8 (589-647)||(34453736-34453795)
chr8 (578-637)||(18069329-18069389)
chr8 (579-631)||(33446663-33446715)
[»] chr6 (9 HSPs)
chr6 (571-648)||(31957917-31957994)
chr6 (577-646)||(7099696-7099765)
chr6 (577-646)||(8794865-8794934)
chr6 (571-615)||(3535261-3535305)
chr6 (571-609)||(2477287-2477325)
chr6 (571-604)||(3416249-3416282)
chr6 (586-635)||(17917496-17917545)
chr6 (582-615)||(23402904-23402937)
chr6 (589-621)||(34624468-34624500)
[»] chr5 (7 HSPs)
chr5 (571-648)||(6296892-6296969)
chr5 (577-621)||(9002989-9003033)
chr5 (581-648)||(29814916-29814983)
chr5 (571-621)||(39107809-39107859)
chr5 (566-615)||(33674811-33674860)
chr5 (571-609)||(29859291-29859329)
chr5 (571-616)||(37322398-37322443)
[»] chr2 (13 HSPs)
chr2 (571-648)||(1652574-1652651)
chr2 (584-646)||(4353643-4353706)
chr2 (571-632)||(10223389-10223451)
chr2 (569-615)||(18526520-18526566)
chr2 (568-609)||(25728082-25728123)
chr2 (572-615)||(7648717-7648760)
chr2 (571-609)||(5251407-5251445)
chr2 (583-621)||(13336239-13336277)
chr2 (587-621)||(18283821-18283855)
chr2 (595-648)||(26009829-26009883)
chr2 (595-637)||(33117098-33117140)
chr2 (583-617)||(45053190-45053224)
chr2 (567-646)||(41508130-41508210)
[»] chr1 (15 HSPs)
chr1 (571-646)||(18635659-18635734)
chr1 (566-648)||(36472588-36472670)
chr1 (571-638)||(32398770-32398837)
chr1 (566-642)||(10799244-10799321)
chr1 (571-611)||(6871274-6871314)
chr1 (593-648)||(15682171-15682227)
chr1 (585-642)||(40543096-40543155)
chr1 (581-617)||(42535754-42535790)
chr1 (582-645)||(32336691-32336753)
chr1 (571-609)||(15535639-15535677)
chr1 (571-636)||(32183218-32183286)
chr1 (577-636)||(52911040-52911101)
chr1 (571-608)||(38222096-38222133)
chr1 (580-636)||(536337-536392)
chr1 (572-604)||(28308380-28308412)
[»] chr3 (13 HSPs)
chr3 (571-648)||(50574736-50574816)
chr3 (572-648)||(8789965-8790041)
chr3 (571-637)||(49972711-49972778)
chr3 (577-649)||(24446896-24446971)
chr3 (577-649)||(24465077-24465152)
chr3 (578-614)||(32027253-32027289)
chr3 (571-618)||(7922676-7922723)
chr3 (594-648)||(28590355-28590412)
chr3 (571-609)||(40111768-40111806)
chr3 (571-609)||(48308084-48308122)
chr3 (577-609)||(10428021-10428053)
chr3 (571-615)||(44692739-44692783)
chr3 (577-648)||(46578095-46578169)
[»] chr7 (9 HSPs)
chr7 (582-648)||(33084908-33084975)
chr7 (571-615)||(31939655-31939699)
chr7 (571-609)||(37830001-37830039)
chr7 (577-622)||(40778180-40778225)
chr7 (572-616)||(37882922-37882966)
chr7 (571-609)||(35451121-35451159)
chr7 (571-643)||(23355909-23355982)
chr7 (572-621)||(24032805-24032854)
chr7 (577-609)||(7879048-7879080)
[»] chr4 (9 HSPs)
chr4 (571-627)||(18838403-18838459)
chr4 (571-622)||(51421444-51421495)
chr4 (571-645)||(33801895-33801969)
chr4 (596-648)||(8456844-8456896)
chr4 (571-648)||(6478434-6478513)
chr4 (586-648)||(30979862-30979925)
chr4 (571-609)||(27112397-27112435)
chr4 (566-615)||(29657296-29657344)
chr4 (571-618)||(38272921-38272966)
[»] scaffold0071 (1 HSPs)
scaffold0071 (571-609)||(63454-63492)
[»] scaffold0179 (1 HSPs)
scaffold0179 (571-615)||(31009-31053)
[»] scaffold0160 (1 HSPs)
scaffold0160 (571-615)||(29568-29612)


Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 362
Target Start/End: Original strand, 16622019 - 16622373
Alignment:
Q  11 tcatgatgatgatgatatctcgtatgtatattatgcacactctttctcttta-tatatgatatatcttcat-tctcactattttattcattccttttaca 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  | ||   |  |    | | | | ||||||||||||||||||||||||    
T  16622019 tcatgatgatgatgatatctcgtatgtatattatgcacactctttctcttttctctactttcaaaacgcgtatataactattttattcattccttttaca 16622118  T
Q  109 gtgtggatgaccttaaactatttacacaagatgagttaatggacatggctttcaaacaagcctttcaggtatgcatgctcttctcaatattttattccta 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16622119 gtgtggatgaccttaaactatttacacaagatgagttaatggacatggctttcaaacaagcctttcaggtatgcatgctcttctcaatattttattccta 16622218  T
Q  209 aatgtgtcactgtcattcattactttaattcctatatttatcataattgcaaacacattcccaactttctgttttattactcattttcatcttcgaggat 308  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  16622219 aatgtgtcactgtcattcattactttaattcctaaatttatcaaaattgcaaacacattcccaactttctcttttattactcattttcatcttccaggat 16622318  T
Q  309 gtgtttgcaatttccatacatttcacatta-ttttacttaatttacttcggttga 362  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16622319 gtgtttgcaatttccatacatttcacattatttttacttaatttacttcggttga 16622373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 461 - 665
Target Start/End: Original strand, 16622474 - 16622681
Alignment:
Q  461 catacagggtagagagaacaacgaaaaccgtccacctaatgcaaggtcagtcacttccactccctttttctgctcttatccttatcttatgcatttttaa 560  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16622474 catacagggtagagagaacaacgaaaaccgtccacctaatgcaaggtcagtcacttccactccctttttctgctcttatccttatcttatgcatttttaa 16622573  T
Q  561 cgtga---ttttgtttttaaatgacaaatgttagtaattagttgttagattagtttttctcctttatccgagtttgaacccaggacctccatccatttct 657  Q
    |||||   |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  16622574 cgtgatttttttttttttaaatgacaaatgttagtaattagttgttagattagtttttctcctttatccgagtttgaacccaggacctccatccaactct 16622673  T
Q  658 atccctta 665  Q
    ||||||||    
T  16622674 atccctta 16622681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 584 - 648
Target Start/End: Complemental strand, 12136600 - 12136535
Alignment:
Q  584 aatgttagtaattagttgttagattagttttt-ctcctttatccgagtttgaacccaggacctcca 648  Q
    |||||||||||||||||||| ||||||||||| ||||||| ||||| ||||||||||| |||||||    
T  12136600 aatgttagtaattagttgtttgattagtttttactcctttgtccgactttgaacccagtacctcca 12136535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 589 - 647
Target Start/End: Original strand, 34453736 - 34453795
Alignment:
Q  589 tagtaattagttgttagattag-tttttctcctttatccgagtttgaacccaggacctcc 647  Q
    |||||||||||||||||||||| |||||||||||| |||| |||||| |||| |||||||    
T  34453736 tagtaattagttgttagattagttttttctcctttgtccgggtttgatcccatgacctcc 34453795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 578 - 637
Target Start/End: Complemental strand, 18069389 - 18069329
Alignment:
Q  578 atgacaaatgttagtaattagttgttagattagt-ttttctcctttatccgagtttgaacc 637  Q
    |||||||||||||||||||||||||| || || | ||| || |||| ||||||||||||||    
T  18069389 atgacaaatgttagtaattagttgttggaataatatttactactttgtccgagtttgaacc 18069329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 579 - 631
Target Start/End: Original strand, 33446663 - 33446715
Alignment:
Q  579 tgacaaatgttagtaattagttgttagattagtttttctcctttatccgagtt 631  Q
    |||||||||||||||| ||||| ||||| ||||||||||| || |||| ||||    
T  33446663 tgacaaatgttagtaaatagttattagaatagtttttctctttaatcctagtt 33446715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 571 - 648
Target Start/End: Complemental strand, 31957994 - 31957917
Alignment:
Q  571 tttttaaatgacaaatgttagtaattagttgttagattagtttttctcctttatccgagtttgaacccaggacctcca 648  Q
    |||||||||| ||||||||| | |||||||||||||||||||||||||||||||| | |||| |||||||||||||||    
T  31957994 tttttaaatggcaaatgttaatgattagttgttagattagtttttctcctttatctgggtttcaacccaggacctcca 31957917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 577 - 646
Target Start/End: Original strand, 7099696 - 7099765
Alignment:
Q  577 aatgacaaatgttagtaattagttgttag-attagtttttctcctttatccgagtttgaacccaggacctc 646  Q
    |||||||||| |||||||||||||||||| ||||  ||||||||||||| |||||| ||| ||||||||||    
T  7099696 aatgacaaatattagtaattagttgttagtattaacttttctcctttatacgagttcgaa-ccaggacctc 7099765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 577 - 646
Target Start/End: Complemental strand, 8794934 - 8794865
Alignment:
Q  577 aatgacaaatgttagtaattagttgttag-attagtttttctcctttatccgagtttgaacccaggacctc 646  Q
    |||||||||| |||||||||||||||||| ||||  ||||||||||||| |||||| ||| ||||||||||    
T  8794934 aatgacaaatattagtaattagttgttagtattaacttttctcctttatacgagttcgaa-ccaggacctc 8794865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 571 - 615
Target Start/End: Complemental strand, 3535305 - 3535261
Alignment:
Q  571 tttttaaatgacaaatgttagtaattagttgttagattagttttt 615  Q
    ||||| |||||||||| |||||||||||||||||||||| |||||    
T  3535305 tttttcaatgacaaatattagtaattagttgttagattaattttt 3535261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 571 - 609
Target Start/End: Complemental strand, 2477325 - 2477287
Alignment:
Q  571 tttttaaatgacaaatgttagtaattagttgttagatta 609  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  2477325 ttttttaatgacaaatgttagtaattaattgttagatta 2477287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 571 - 604
Target Start/End: Complemental strand, 3416282 - 3416249
Alignment:
Q  571 tttttaaatgacaaatgttagtaattagttgtta 604  Q
    ||||| ||||||||||||||||||||||||||||    
T  3416282 tttttgaatgacaaatgttagtaattagttgtta 3416249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 586 - 635
Target Start/End: Original strand, 17917496 - 17917545
Alignment:
Q  586 tgttagtaattagttgttagattagtttttctcctttatccgagtttgaa 635  Q
    ||||||||||||||||||| |||||||||||| |||| | ||| ||||||    
T  17917496 tgttagtaattagttgttatattagtttttcttctttgttcgaatttgaa 17917545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 582 - 615
Target Start/End: Complemental strand, 23402937 - 23402904
Alignment:
Q  582 caaatgttagtaattagttgttagattagttttt 615  Q
    |||||||||||||||||||||||||||| |||||    
T  23402937 caaatgttagtaattagttgttagattaattttt 23402904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 589 - 621
Target Start/End: Original strand, 34624468 - 34624500
Alignment:
Q  589 tagtaattagttgttagattagtttttctcctt 621  Q
    ||||||||||||||||||||||||||| |||||    
T  34624468 tagtaattagttgttagattagtttttttcctt 34624500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 571 - 648
Target Start/End: Complemental strand, 6296969 - 6296892
Alignment:
Q  571 tttttaaatgacaaatgttagtaattagttgttagattagtttttctcctttatccgagtttgaacccaggacctcca 648  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||||| || | |||||||||||| |||||||    
T  6296969 ttttttaatggcaaatgttagtaattagttgttagattagtttttctcctttgtctgggtttgaacccagaacctcca 6296892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 577 - 621
Target Start/End: Complemental strand, 9003033 - 9002989
Alignment:
Q  577 aatgacaaatgttagtaattagttgttagattagtttttctcctt 621  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  9003033 aatgacaaatgttagtaattagttgttagattagtttttctcctt 9002989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 581 - 648
Target Start/End: Original strand, 29814916 - 29814983
Alignment:
Q  581 acaaatgttagtaattagttgttagattagtttttctcctttatccgagtttgaacccaggacctcca 648  Q
    ||||||||||||||||| |||||| ||||||||||||||||| | |  ||||||||| ||||||||||    
T  29814916 acaaatgttagtaattatttgttacattagtttttctcctttgttcaggtttgaacctaggacctcca 29814983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 571 - 621
Target Start/End: Complemental strand, 39107859 - 39107809
Alignment:
Q  571 tttttaaatgacaaatgttagtaattagttgttagattagtttttctcctt 621  Q
    ||||| |||| ||||||||||||||||||||||||| ||||||||||||||    
T  39107859 ttttttaatggcaaatgttagtaattagttgttagaatagtttttctcctt 39107809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 566 - 615
Target Start/End: Complemental strand, 33674860 - 33674811
Alignment:
Q  566 ttttgtttttaaatgacaaatgttagtaattagttgttagattagttttt 615  Q
    |||||||||| ||||  ||||||||||||||||||||||||||| |||||    
T  33674860 ttttgtttttgaatgttaaatgttagtaattagttgttagattaattttt 33674811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 571 - 609
Target Start/End: Complemental strand, 29859329 - 29859291
Alignment:
Q  571 tttttaaatgacaaatgttagtaattagttgttagatta 609  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  29859329 ttttttaatgtcaaatgttagtaattagttgttagatta 29859291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 571 - 616
Target Start/End: Original strand, 37322398 - 37322443
Alignment:
Q  571 tttttaaatgacaaatgttagtaattagttgttagattagtttttc 616  Q
    ||||| ||||| |||||||||||||||||||||| |||| ||||||    
T  37322398 ttttttaatgataaatgttagtaattagttgttaaattaatttttc 37322443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 571 - 648
Target Start/End: Complemental strand, 1652651 - 1652574
Alignment:
Q  571 tttttaaatgacaaatgttagtaattagttgttagattagtttttctcctttatccgagtttgaacccaggacctcca 648  Q
    ||||| |||| |||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||    
T  1652651 ttttttaatggcaaatgttggtaattagttgttagattagtttttctccttcatccgggtttgaacctaggacctcca 1652574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 584 - 646
Target Start/End: Original strand, 4353643 - 4353706
Alignment:
Q  584 aatgttagtaattagttgttagattag-tttttctcctttatccgagtttgaacccaggacctc 646  Q
    |||||||||||||| |||||||||||| ||||||||||| | ||| ||||||||| ||||||||    
T  4353643 aatgttagtaattaattgttagattagttttttctccttcagccgggtttgaacctaggacctc 4353706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 571 - 632
Target Start/End: Original strand, 10223389 - 10223451
Alignment:
Q  571 tttttaaatgacaaatgttagtaattagttgttagatt-agtttttctcctttatccgagttt 632  Q
    ||||| |||||||||||||||||||||||||||| ||| | |||||||||||| |||| ||||    
T  10223389 ttttttaatgacaaatgttagtaattagttgttaaattgattttttctcctttgtccgggttt 10223451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 569 - 615
Target Start/End: Complemental strand, 18526566 - 18526520
Alignment:
Q  569 tgtttttaaatgacaaatgttagtaattagttgttagattagttttt 615  Q
    ||||||| || ||||||||||||||||||||||||| ||||||||||    
T  18526566 tgttttttaacgacaaatgttagtaattagttgttaaattagttttt 18526520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 568 - 609
Target Start/End: Complemental strand, 25728123 - 25728082
Alignment:
Q  568 ttgtttttaaatgacaaatgttagtaattagttgttagatta 609  Q
    |||||||| |||||||||||||||| ||||||||||||||||    
T  25728123 ttgtttttgaatgacaaatgttagtgattagttgttagatta 25728082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 572 - 615
Target Start/End: Original strand, 7648717 - 7648760
Alignment:
Q  572 ttttaaatgacaaatgttagtaattagttgttagattagttttt 615  Q
    ||||||||||||||| ||| |||||||||||||||||| |||||    
T  7648717 ttttaaatgacaaatattaataattagttgttagattaattttt 7648760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 571 - 609
Target Start/End: Original strand, 5251407 - 5251445
Alignment:
Q  571 tttttaaatgacaaatgttagtaattagttgttagatta 609  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  5251407 ttttttaatgtcaaatgttagtaattagttgttagatta 5251445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 583 - 621
Target Start/End: Original strand, 13336239 - 13336277
Alignment:
Q  583 aaatgttagtaattagttgttagattagtttttctcctt 621  Q
    ||||| || ||||||||||||||||||||||||||||||    
T  13336239 aaatgataataattagttgttagattagtttttctcctt 13336277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 587 - 621
Target Start/End: Complemental strand, 18283855 - 18283821
Alignment:
Q  587 gttagtaattagttgttagattagtttttctcctt 621  Q
    |||||||||||||||||||| ||||||||||||||    
T  18283855 gttagtaattagttgttagaatagtttttctcctt 18283821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 595 - 648
Target Start/End: Complemental strand, 26009883 - 26009829
Alignment:
Q  595 ttagttgttagattagttttt-ctcctttatccgagtttgaacccaggacctcca 648  Q
    ||||| ||||||||||||||| ||||||  |||| ||||||||||||||||||||    
T  26009883 ttagtagttagattagttttttctccttcgtccgggtttgaacccaggacctcca 26009829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 595 - 637
Target Start/End: Original strand, 33117098 - 33117140
Alignment:
Q  595 ttagttgttagattagtttttctcctttatccgagtttgaacc 637  Q
    |||||| ||||||||||||||||| |||| |||||||||||||    
T  33117098 ttagttattagattagtttttctcttttacccgagtttgaacc 33117140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 583 - 617
Target Start/End: Complemental strand, 45053224 - 45053190
Alignment:
Q  583 aaatgttagtaattagttgttagattagtttttct 617  Q
    ||||||||||| |||||||||||||||||||||||    
T  45053224 aaatgttagtacttagttgttagattagtttttct 45053190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 567 - 646
Target Start/End: Original strand, 41508130 - 41508210
Alignment:
Q  567 tttgtttttaaatgacaaatgttagtaattagttgttagattagt-ttttctcctttatccgagtttgaacccaggacctc 646  Q
    ||||||| | ||||||||||||||| |||||||||||| |||| | ||| ||||||  |||| |||||||| ||| |||||    
T  41508130 tttgtttctgaatgacaaatgttagcaattagttgttatattaatatttactccttcgtccgggtttgaactcagaacctc 41508210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 571 - 646
Target Start/End: Original strand, 18635659 - 18635734
Alignment:
Q  571 tttttaaatgacaaatgttagtaattagttgttagattagtttttctcctttatccgagtttgaacccaggacctc 646  Q
    ||||| |||| |||||||||||||||||||||||||| |||||||||| ||| ||||  |||||||||||||||||    
T  18635659 ttttttaatggcaaatgttagtaattagttgttagatcagtttttctcatttgtccggatttgaacccaggacctc 18635734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 566 - 648
Target Start/End: Original strand, 36472588 - 36472670
Alignment:
Q  566 ttttgtttttaaatgacaaatgttagtaattagttgttagattagtttttc-tcctttatccgagtttgaacccaggacctcca 648  Q
    |||| ||||| ||||||| ||||||||| |||||||||||||||||||||| |||||| |||| ||||||||||||||||||||    
T  36472588 ttttttttttgaatgacagatgttagta-ttagttgttagattagtttttcctcctttgtccgggtttgaacccaggacctcca 36472670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 571 - 638
Target Start/End: Complemental strand, 32398837 - 32398770
Alignment:
Q  571 tttttaaatgacaaatgttagtaattagttgttagattagtttttctcctttatccgagtttgaaccc 638  Q
    ||||| |||| ||||| ||||||||||||||||||||||||||||||||||  || ||||||||||||    
T  32398837 ttttttaatggcaaatattagtaattagttgttagattagtttttctccttcgtctgagtttgaaccc 32398770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 566 - 642
Target Start/End: Complemental strand, 10799321 - 10799244
Alignment:
Q  566 ttttgtttttaaatgacaaatgttagtaattagttgttagattagt-ttttctcctttatccgagtttgaacccagga 642  Q
    |||| |||||||||   ||||||||||||||||||||||||||| | ||| |||||| ||||  ||||||||||||||    
T  10799321 ttttctttttaaatcgaaaatgttagtaattagttgttagattaatatttactccttcatcctggtttgaacccagga 10799244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 571 - 611
Target Start/End: Complemental strand, 6871314 - 6871274
Alignment:
Q  571 tttttaaatgacaaatgttagtaattagttgttagattagt 611  Q
    ||||||||||||||||||||||| |||||| ||||||||||    
T  6871314 tttttaaatgacaaatgttagtagttagttattagattagt 6871274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 593 - 648
Target Start/End: Original strand, 15682171 - 15682227
Alignment:
Q  593 aattagttgttagattagttttt-ctcctttatccgagtttgaacccaggacctcca 648  Q
    ||||||||||||||||| | ||| |||||| ||||| ||||||||||||||||||||    
T  15682171 aattagttgttagattaatatttactccttcatccgggtttgaacccaggacctcca 15682227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 585 - 642
Target Start/End: Original strand, 40543096 - 40543155
Alignment:
Q  585 atgttagtaattagttgttagattag--tttttctcctttatccgagtttgaacccagga 642  Q
    |||||||||||||||||||||| |||  |||||||||||| |||| ||||| ||||||||    
T  40543096 atgttagtaattagttgttagaatagtttttttctcctttgtccgggtttgtacccagga 40543155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 581 - 617
Target Start/End: Complemental strand, 42535790 - 42535754
Alignment:
Q  581 acaaatgttagtaattagttgttagattagtttttct 617  Q
    |||||||||||||||||||||||||||| ||||||||    
T  42535790 acaaatgttagtaattagttgttagattcgtttttct 42535754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 582 - 645
Target Start/End: Original strand, 32336691 - 32336753
Alignment:
Q  582 caaatgttagtaattagttgttagattagtttttctcctttatccgagtttgaacccaggacct 645  Q
    ||||||||| ||||| |||||||||||| |||||||||||| |||  ||||||||||| |||||    
T  32336691 caaatgttaataatt-gttgttagattaatttttctcctttgtcctggtttgaacccaagacct 32336753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 571 - 609
Target Start/End: Original strand, 15535639 - 15535677
Alignment:
Q  571 tttttaaatgacaaatgttagtaattagttgttagatta 609  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  15535639 ttttttaatgtcaaatgttagtaattagttgttagatta 15535677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 571 - 636
Target Start/End: Original strand, 32183218 - 32183286
Alignment:
Q  571 tttttaaatgacaaatgttagtaattagttgttagattag---tttttctcctttatccgagtttgaac 636  Q
    ||||| |||| ||||| |||||| ||||||||||||||||   ||||||| ||||||||| ||||||||    
T  32183218 tttttgaatggcaaatattagtagttagttgttagattagttttttttcttctttatccgggtttgaac 32183286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 577 - 636
Target Start/End: Complemental strand, 52911101 - 52911040
Alignment:
Q  577 aatgacaaatgttagtaattagttgttagattagttttt--ctcctttatccgagtttgaac 636  Q
    |||| |||||||| |||||||||||||||| ||||||||  ||||||  |||||||||||||    
T  52911101 aatggcaaatgttcgtaattagttgttagactagttttttcctccttcctccgagtttgaac 52911040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 571 - 608
Target Start/End: Original strand, 38222096 - 38222133
Alignment:
Q  571 tttttaaatgacaaatgttagtaattagttgttagatt 608  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  38222096 tttttaaatgacaaatgctagtagttagttgttagatt 38222133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 580 - 636
Target Start/End: Complemental strand, 536392 - 536337
Alignment:
Q  580 gacaaatgttagtaattagttgttagattagtttttctcctttatccgagtttgaac 636  Q
    ||||||||||| |||||||||||| ||||| ||||| | ||||| ||||||||||||    
T  536392 gacaaatgttaataattagttgttcgattaattttt-ttctttacccgagtttgaac 536337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 572 - 604
Target Start/End: Original strand, 28308380 - 28308412
Alignment:
Q  572 ttttaaatgacaaatgttagtaattagttgtta 604  Q
    |||| ||||||||||||||||||||||||||||    
T  28308380 tttttaatgacaaatgttagtaattagttgtta 28308412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 571 - 648
Target Start/End: Original strand, 50574736 - 50574816
Alignment:
Q  571 tttttaaatgacaaatgttagtaattagttgttagattag---tttttctcctttatccgagtttgaacccaggacctcca 648  Q
    ||||| |||| |||||||||||||||||||||||||||||   ||||||||||| || || |||| |||||||||||||||    
T  50574736 tttttgaatggcaaatgttagtaattagttgttagattagttttttttctccttcattcgggtttcaacccaggacctcca 50574816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 572 - 648
Target Start/End: Original strand, 8789965 - 8790041
Alignment:
Q  572 ttttaaatgacaaatgttagtaattagttgttagattagtttttctcctttatccgagtttgaacccaggacctcca 648  Q
    |||| |||| |||||||| ||| |||||| |||||||||||| ||||| || || | ||||||||||||||||||||    
T  8789965 ttttgaatggcaaatgtttgtagttagttattagattagtttgtctccgttgtctgggtttgaacccaggacctcca 8790041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 571 - 637
Target Start/End: Complemental strand, 49972778 - 49972711
Alignment:
Q  571 tttttaaatgacaaatgttagtaattagttgttagattagt-ttttctcctttatccgagtttgaacc 637  Q
    ||||| ||||| |||||||||||||||||||||| |||| | ||| ||| ||||||||||||||||||    
T  49972778 tttttgaatgaaaaatgttagtaattagttgttatattaatctttactcatttatccgagtttgaacc 49972711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 577 - 649
Target Start/End: Complemental strand, 24446971 - 24446896
Alignment:
Q  577 aatgacaaatgttagtaattagtt-gttagatta--gtttttctcctttatccgagtttgaacccaggacctccat 649  Q
    |||| |||||| ||||| |||||| |||||||||  ||||||||||||  ||||||||||| ||||||||||||||    
T  24446971 aatggcaaatgctagtagttagtttgttagattaatgtttttctccttcgtccgagtttgatcccaggacctccat 24446896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 577 - 649
Target Start/End: Complemental strand, 24465152 - 24465077
Alignment:
Q  577 aatgacaaatgttagtaattagtt-gttagatta--gtttttctcctttatccgagtttgaacccaggacctccat 649  Q
    |||| |||||| ||||| |||||| |||||||||  ||||||||||||  ||||||||||| ||||||||||||||    
T  24465152 aatggcaaatgctagtagttagtttgttagattaatgtttttctccttcgtccgagtttgatcccaggacctccat 24465077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 578 - 614
Target Start/End: Complemental strand, 32027289 - 32027253
Alignment:
Q  578 atgacaaatgttagtaattagttgttagattagtttt 614  Q
    ||||||||| |||||||||||||||||||||||||||    
T  32027289 atgacaaatattagtaattagttgttagattagtttt 32027253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 571 - 618
Target Start/End: Original strand, 7922676 - 7922723
Alignment:
Q  571 tttttaaatgacaaatgttagtaattagttgttagattagtttttctc 618  Q
    ||||||| |||||||||||| |||||| ||||| ||||||||||||||    
T  7922676 tttttaattgacaaatgttaataattatttgttggattagtttttctc 7922723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 594 - 648
Target Start/End: Original strand, 28590355 - 28590412
Alignment:
Q  594 attagttgttagattagtttt---tctcctttatccgagtttgaacccaggacctcca 648  Q
    |||||||||||||||||||||   |||||||| |||| |||||||| |||||||||||    
T  28590355 attagttgttagattagttttttttctcctttgtccgggtttgaactcaggacctcca 28590412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 571 - 609
Target Start/End: Complemental strand, 40111806 - 40111768
Alignment:
Q  571 tttttaaatgacaaatgttagtaattagttgttagatta 609  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  40111806 ttttttaataacaaatgttagtaattagttgttagatta 40111768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 571 - 609
Target Start/End: Original strand, 48308084 - 48308122
Alignment:
Q  571 tttttaaatgacaaatgttagtaattagttgttagatta 609  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  48308084 ttttttaatgacaaatgttagtagttagttgttagatta 48308122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 577 - 609
Target Start/End: Original strand, 10428021 - 10428053
Alignment:
Q  577 aatgacaaatgttagtaattagttgttagatta 609  Q
    ||||||||||||| |||||||||||||||||||    
T  10428021 aatgacaaatgttcgtaattagttgttagatta 10428053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 571 - 615
Target Start/End: Complemental strand, 44692783 - 44692739
Alignment:
Q  571 tttttaaatgacaaatgttagtaattagttgttagattagttttt 615  Q
    |||||||||||  ||||||||||||||||||| |||||| |||||    
T  44692783 tttttaaatgattaatgttagtaattagttgtcagattaattttt 44692739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 577 - 648
Target Start/End: Original strand, 46578095 - 46578169
Alignment:
Q  577 aatgacaaatgttagtaattagttgttagattag---tttttctcctttatccgagtttgaacccaggacctcca 648  Q
    |||| |||||||||||||||||||||| | ||||   |||||||||||| |||  ||||||||| ||||| ||||    
T  46578095 aatggcaaatgttagtaattagttgtttggttagttttttttctcctttgtccaggtttgaaccaaggacttcca 46578169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 582 - 648
Target Start/End: Original strand, 33084908 - 33084975
Alignment:
Q  582 caaatgttagtaattagttgttagattag-tttttctcctttatccgagtttgaacccaggacctcca 648  Q
    ||||||||||||||||||||||||||||| |||||||||||  |||  |||| |||||||||||||||    
T  33084908 caaatgttagtaattagttgttagattagttttttctccttcgtccaggttttaacccaggacctcca 33084975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 571 - 615
Target Start/End: Complemental strand, 31939699 - 31939655
Alignment:
Q  571 tttttaaatgacaaatgttagtaattagttgttagattagttttt 615  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||    
T  31939699 tttttgaatgacaaatattagtaattagttgttagattagttttt 31939655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 571 - 609
Target Start/End: Complemental strand, 37830039 - 37830001
Alignment:
Q  571 tttttaaatgacaaatgttagtaattagttgttagatta 609  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  37830039 tttttgaatgacaaatgttagtaattagttgttagatta 37830001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 577 - 622
Target Start/End: Original strand, 40778180 - 40778225
Alignment:
Q  577 aatgacaaatgttagtaattagttgttagattagtttttctccttt 622  Q
    |||| ||||||||| |||||||||||| ||||||||||||||||||    
T  40778180 aatgccaaatgttattaattagttgttcgattagtttttctccttt 40778225  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 572 - 616
Target Start/End: Original strand, 37882922 - 37882966
Alignment:
Q  572 ttttaaatgacaaatgttagtaattagttgttagattagtttttc 616  Q
    |||| |||||||||| | |||||||||||||||||||||||||||    
T  37882922 tttttaatgacaaatatcagtaattagttgttagattagtttttc 37882966  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 571 - 609
Target Start/End: Original strand, 35451121 - 35451159
Alignment:
Q  571 tttttaaatgacaaatgttagtaattagttgttagatta 609  Q
    ||||||| |||||||||||| ||||||||||||||||||    
T  35451121 tttttaagtgacaaatgttaataattagttgttagatta 35451159  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 571 - 643
Target Start/End: Complemental strand, 23355982 - 23355909
Alignment:
Q  571 tttttaaatgacaaatgttagtaattagttgttagattagttttt-ctcctttatccgagtttgaacccaggac 643  Q
    ||||| || |||| ||||||||| |||||| |||||||| | ||| ||||||| || |||||||||||||||||    
T  23355982 tttttgaacgacatatgttagtatttagtttttagattaatatttactcctttgtctgagtttgaacccaggac 23355909  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 572 - 621
Target Start/End: Original strand, 24032805 - 24032854
Alignment:
Q  572 ttttaaatgacaaatgttagtaattagttgttagattagtttttctcctt 621  Q
    |||| |||| ||||| |||| ||||| |||||||||||||||||||||||    
T  24032805 tttttaatgccaaatattaggaattaattgttagattagtttttctcctt 24032854  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 577 - 609
Target Start/End: Original strand, 7879048 - 7879080
Alignment:
Q  577 aatgacaaatgttagtaattagttgttagatta 609  Q
    ||||||||||||||| |||||||||||||||||    
T  7879048 aatgacaaatgttagcaattagttgttagatta 7879080  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 571 - 627
Target Start/End: Complemental strand, 18838459 - 18838403
Alignment:
Q  571 tttttaaatgacaaatgttagtaattagttgttagattagtttttctcctttatccg 627  Q
    |||||||||||||||||||||||||||||  ||||| ||||||||||| ||| ||||    
T  18838459 tttttaaatgacaaatgttagtaattagtaattagaatagtttttctcatttgtccg 18838403  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 571 - 622
Target Start/End: Original strand, 51421444 - 51421495
Alignment:
Q  571 tttttaaatgacaaatgttagtaattagttgttagattagtttttctccttt 622  Q
    ||||| |||||||| |||||||||||| |||||| |||||||||||||||||    
T  51421444 ttttttaatgacaactgttagtaattaattgttatattagtttttctccttt 51421495  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 571 - 645
Target Start/End: Original strand, 33801895 - 33801969
Alignment:
Q  571 tttttaaatgacaaatgttagtaattagttgttagattagtttttctcctttatccgagtttgaacccaggacct 645  Q
    |||| ||||||| ||| |||||||||||||||||||||| ||||| |||||  |||  ||||||||||| |||||    
T  33801895 ttttgaaatgaccaatattagtaattagttgttagattactttttttccttcgtccaggtttgaacccaagacct 33801969  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 596 - 648
Target Start/End: Complemental strand, 8456896 - 8456844
Alignment:
Q  596 tagttgttagattagtttttctcctttatccgagtttgaacccaggacctcca 648  Q
    ||||||||||||||| |||| |||||| |||| ||||||||||||||| ||||    
T  8456896 tagttgttagattagcttttgtcctttgtccgggtttgaacccaggacatcca 8456844  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 571 - 648
Target Start/End: Complemental strand, 6478513 - 6478434
Alignment:
Q  571 tttttaaatgacaaatgttagtaattagtt-gttagattagt-ttttctcctttatccgagtttgaacccaggacctcca 648  Q
    |||||||||| ||||| |||||| |||||| ||||||||| | ||||||||||| |||| |||||||| |||| ||||||    
T  6478513 tttttaaatggcaaatattagtagttagtttgttagattaatattttctcctttgtccgggtttgaacacaggccctcca 6478434  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 586 - 648
Target Start/End: Complemental strand, 30979925 - 30979862
Alignment:
Q  586 tgttagtaattagttgttagattagt-ttttctcctttatccgagtttgaacccaggacctcca 648  Q
    ||||||| |||||||||||||||||| ||||||||||  |||| |||||| |||| ||||||||    
T  30979925 tgttagtgattagttgttagattagttttttctccttcgtccgggtttgagcccaagacctcca 30979862  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 571 - 609
Target Start/End: Original strand, 27112397 - 27112435
Alignment:
Q  571 tttttaaatgacaaatgttagtaattagttgttagatta 609  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  27112397 ttttttaatgacaaatgttagtaattaattgttagatta 27112435  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 566 - 615
Target Start/End: Original strand, 29657296 - 29657344
Alignment:
Q  566 ttttgtttttaaatgacaaatgttagtaattagttgttagattagttttt 615  Q
    |||| ||||| |||||||||||||||| |||||||||||||| |||||||    
T  29657296 ttttttttttgaatgacaaatgttagt-attagttgttagatgagttttt 29657344  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 571 - 618
Target Start/End: Original strand, 38272921 - 38272966
Alignment:
Q  571 tttttaaatgacaaatgttagtaattagttgttagattagtttttctc 618  Q
    ||||| |||||||||||||||||  |||||||||||||||| ||||||    
T  38272921 ttttttaatgacaaatgttagta--tagttgttagattagtatttctc 38272966  T

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Target: scaffold0071 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 571 - 609
Target Start/End: Complemental strand, 63492 - 63454
Alignment:
Q  571 tttttaaatgacaaatgttagtaattagttgttagatta 609  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  63492 tttttgaatgacaaatgttattaattagttgttagatta 63454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 571 - 615
Target Start/End: Original strand, 31009 - 31053
Alignment:
Q  571 tttttaaatgacaaatgttagtaattagttgttagattagttttt 615  Q
    ||||| |||||||||| ||| |||||||||||||||||| |||||    
T  31009 ttttttaatgacaaatattattaattagttgttagattaattttt 31053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 571 - 615
Target Start/End: Complemental strand, 29612 - 29568
Alignment:
Q  571 tttttaaatgacaaatgttagtaattagttgttagattagttttt 615  Q
    ||||| |||| |||||| ||||||||||||||||| |||||||||    
T  29612 ttttttaatggcaaatgctagtaattagttgttagtttagttttt 29568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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