View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2964_low_12 (Length: 578)
Name: NF2964_low_12
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2964_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 11 - 560
Target Start/End: Complemental strand, 50485302 - 50484754
Alignment:
| Q |
11 |
cagagaacataaagccaccagcaatgagtgataggactatagcagctggaactaggataggactgaagataacaagtagaggggttgcaatgattaatcc |
110 |
Q |
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| T |
50485302 |
cagagaacataaagccaccagcaatgagtgataggactatagcagctggaactaggataggactgaagataacaagtagaggggttgcaatgattaatcc |
50485203 |
T |
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| Q |
111 |
tatgacagtaccaacaaggattagtccagacaagaacaacagtgtcacaccaatagttgcagctgttatgaacttcactgtttggcgtgagggttggttg |
210 |
Q |
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| T |
50485202 |
tatgacagtaccaacaaggattagtccagacaagaacaacagtgtcacaccaatagttgcagctgttatgaacttcactgtttggcgtgagggttggttg |
50485103 |
T |
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| Q |
211 |
ttgttgttgatgttggtgtcatagggtgatcctccgtaggatcctccatatgatgagtaggatcctgttcttccttgatcagtcattgtggcaagacaaa |
310 |
Q |
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| T |
50485102 |
ttgttgttgatgttggtgtcatagggtgatcctccgtaggatcctccatatgatgagtaggatcctgttcttccttgatcagtcatggtggcaagacaaa |
50485003 |
T |
|
| Q |
311 |
ttcacaagnnnnnnnnnnttatgattgaggattgagtttttagtgttgagagttgatggtagagttgtttgtgtgaaaaagaagcgttggtatatagcat |
410 |
Q |
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| T |
50485002 |
ttcacaag-aaaaaaaaattatgattgaggattgagtttttagtgttgagagttgatggtagagttgtttgtgtgaaaaagaagcgttggtatatagcat |
50484904 |
T |
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| Q |
411 |
tattataaggggaaccggtgacagattacttggcaagaggtgaagaagcattgcatgtcgtggctgcattgcatgaaactatgtagtacaagaagcaaca |
510 |
Q |
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| T |
50484903 |
tattataaggggaaccggtgacagattacttggcaagaggtgaagaagcattgcatgtcgtggctgcattgcatgaaactatgtagtacaagaagcaaca |
50484804 |
T |
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| Q |
511 |
cctgtcctcttaaatgactagtgtctctgctaaaattacttagacaaaac |
560 |
Q |
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| T |
50484803 |
cctgtcctcttaaatgactagtgtctctgctaaaattacttagacaaaac |
50484754 |
T |
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