View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2964_low_13 (Length: 573)
Name: NF2964_low_13
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2964_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 496; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 1 - 561
Target Start/End: Complemental strand, 3879317 - 3878743
Alignment:
| Q |
1 |
catgtcatatatatcaatctctgcgacagttaaaatacctccaacatagagctgtgagctatagcagccattgatgcagaagtgatgccctcgcagctat |
100 |
Q |
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|||||||| |||||||| |||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3879317 |
catgtcattaatatcaatatctgggacagataaaatacctccaacatagagctatgagctatagcagccattgatgcagaagtgatgccctcgcagctat |
3879218 |
T |
|
| Q |
101 |
gaagccttagaattgtcaacattgtcatccgaaccgacttaaaagagaaaagccatatactttagttcaaaatacaagcttacatatgcaaaaaagcgag |
200 |
Q |
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| T |
3879217 |
gaagccttagaattgtcaacattgtcatccgaaccgacttaaaagagaaaagccatatactttagttcaaaatacaagcttacatatgcaaaaaagcgag |
3879118 |
T |
|
| Q |
201 |
tatacaatttgaagcacacctccaaagatatgcttgggcagtatgatgaatcaagaaaaccaagattaggacaatgctgcgctatttcacgcagggtttc |
300 |
Q |
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| T |
3879117 |
tatacaatttgaagcacacctccaaagatatgcttgggcagtatgatgaatcaagaaaaccaagattaggacaatgctgcgctatttcacgcagggtttc |
3879018 |
T |
|
| Q |
301 |
atcgctgacacaagaacagttacgcatgtccagcttcaccagttgagggcatgaagttgcagcagcacgaataacagcatcaggaagtttgttgcaagaa |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3879017 |
atcgctgacacaagaacagttacgcatgtccagcttcaccagttgagggcatgaagttgcaacagcacgaataacagcatcaggaagtttgttgcaagaa |
3878918 |
T |
|
| Q |
401 |
ccaatatcaagttcatgtagaagagggcaatcaagtacaacatgtgccatgttactgctc--------------tttaagttgtgggcacctgaaaaatg |
486 |
Q |
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| T |
3878917 |
ccaatatcaagttcatgtagaagagggcaatcaagtacaacctgtgccatgttactgctcttcaaagacatagttttaagttgtgggcacctgaaaaatg |
3878818 |
T |
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| Q |
487 |
aataaaccatcactttttattttatcatcggaggtgtcagtcaaactttgaggcatattcacctgacttgtattc |
561 |
Q |
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| T |
3878817 |
aataaaccatcactttttattttatcatcggaggtgtcagtcaaactttgaggcatattcacctgacttgtattc |
3878743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 35 - 506
Target Start/End: Complemental strand, 3865303 - 3864801
Alignment:
| Q |
35 |
atacctccaacatagagctgtgagctatagcagccattgatgcagaagtgatgccctcgcagctatgaagccttagaattgtcaacattgtcatccgaac |
134 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||||| | ||||| |
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| T |
3865303 |
atacctccaacatagaactgtgagctattgcagccattgacgcagaagtgatgccctcacagctatgaagtcttagaatggtcaacattgggagtcgaac |
3865204 |
T |
|
| Q |
135 |
cgacttaaaagagaaa------------------agccatatactttagttcaaaatacaagcttacatatgcaaaaaagcgagtatacaatttgaagca |
216 |
Q |
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| T |
3865203 |
agacttaaaaaagaaaggtgaccgtgtcagacaaagctagaaactcttgttcaaaatacaatcttaaatatgcaaaaaata-agtatacagtttaaagca |
3865105 |
T |
|
| Q |
217 |
cacctccaaagatatgcttgggcagtatgatgaatcaagaaaaccaagattaggacaatgctgcgctatttcacgcagggtttcatcgctgacacaagaa |
316 |
Q |
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|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||| |
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| T |
3865104 |
cacctccaaagatatgtttgggcagtatgatgcatcaagaaaaccaagattaggacaatgttgtgctatttcacgcagtgtttcatcgctgacacaagaa |
3865005 |
T |
|
| Q |
317 |
cagttacgcatgtccagcttcaccagttgagggcatgaagttgcagcagcacgaataacagcatcaggaagtttgttgcaagaaccaatatcaagttcat |
416 |
Q |
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|| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||| |
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| T |
3865004 |
caattacgcatgtccagtttcactagttgagggcatgaagttgcagcagcacgaatagcagcatcaggaagtttgtggcaagaacccatatcaagttcaa |
3864905 |
T |
|
| Q |
417 |
gtagaagagggcaatcaagtacaacatgtgccatgttactgctc--------------tttaagttgtgggcacctgaaaaatgaataaaccatcacttt |
502 |
Q |
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| T |
3864904 |
gcagaagagggcaattaagcacaacttgtgccatgttactgcgcttcaatgacatggttttaagttgcgggcacctgaaaaaagaataaaccatcacttt |
3864805 |
T |
|
| Q |
503 |
ttat |
506 |
Q |
| |
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|||| |
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| T |
3864804 |
ttat |
3864801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 561
Target Start/End: Complemental strand, 3864777 - 3864736
Alignment:
| Q |
520 |
gtgtcagtcaaactttgaggcatattcacctgacttgtattc |
561 |
Q |
| |
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||||| ||| || ||||||||||||||||||||||||||||| |
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| T |
3864777 |
gtgtcggtcgaagtttgaggcatattcacctgacttgtattc |
3864736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 319 - 399
Target Start/End: Original strand, 8357452 - 8357532
Alignment:
| Q |
319 |
gttacgcatgtccagcttcaccagttgagggcatgaagttgcagcagcacgaataacagcatcaggaagtttgttgcaaga |
399 |
Q |
| |
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||||| |||||||| |||||| | | ||||||||||| ||||||| | || ||| |||||| ||||||||||| |||||| |
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| T |
8357452 |
gttacacatgtccatcttcactaatagagggcatgaacttgcagccgaaccgatagcagcataaggaagtttgtggcaaga |
8357532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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