View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2964_low_16 (Length: 510)
Name: NF2964_low_16
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2964_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Original strand, 34572777 - 34573270
Alignment:
| Q |
1 |
caagttcacatatgttagttcctttgctagcaatgtgggactaaaa-cactttttactttctttctactcctcacacctcacttgccactcacttgtaat |
99 |
Q |
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||||||||||||||||| |||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34572777 |
caagttcacatatgttaattcctttggtggcaatgtgggactaaaaacactttttactttctttctactcctcacacctcacttgccactcacttgtaat |
34572876 |
T |
|
| Q |
100 |
aatattacttgcagttccaacgagttccatatgcaaagcttttgtgctgctaaattaaaatcatgtttgggagttcagtattctgtttaaattgccaaaa |
199 |
Q |
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| T |
34572877 |
aatattacttgcagttcca----------tatgcaaagcttttgtgctgctaaattaaaatcatgtttgggagttcagtattctgtttaaattgccaaa- |
34572965 |
T |
|
| Q |
200 |
cctattatcaagagccaggttcaatcaagatgacatcaagttcaatttcataaagtgcaatcaatgttttacaagtcttatggagaacaactttgctatg |
299 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34572966 |
cctagtatcaagatccaggttcaatcaagatgacatcaagttcaatttcataaagtgcaatcaatgttttacaagtctgatggagaacaactttgctatg |
34573065 |
T |
|
| Q |
300 |
tcggaacggtactatgataaaaatctagtggctatggatccattttagatgaatattttgttgagccaacagaagaaaagaaatnnnnnnntcaaaagtt |
399 |
Q |
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| T |
34573066 |
tcggaacggtactatgataaaaatctagtggctatggatccattttagatgaatattttgttgagccaacagaagaaaagaaataaaaaaatcaaaagtt |
34573165 |
T |
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| Q |
400 |
gaacgtcaaagacccttaagagatttagatatcatatcattaatcaaaacc-----ttattaggtaaataagccacatcccttatatattcaacatttag |
494 |
Q |
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| T |
34573166 |
gaacgtcaaagacccttaagagatttagatatcatatcattaatcaaaaccttattttattaggtaaataagccacatcccttatatattcaacatttag |
34573265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 100
Target Start/End: Original strand, 34583329 - 34583358
Alignment:
| Q |
71 |
tcacacctcacttgccactcacttgtaata |
100 |
Q |
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| T |
34583329 |
tcacacctcacttgccactcacttgtaata |
34583358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 191
Target Start/End: Original strand, 38494105 - 38494180
Alignment:
| Q |
118 |
aacgagttccatatgcaaagcttttgtgctgctaaattaaaatcatgtttgggagttc--agtattctgtttaaat |
191 |
Q |
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| T |
38494105 |
aacgagttccatatacaaagcttttgtgatgctaaattaaaattttgtttgtgtgttcatagtgttctgtttaaat |
38494180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 38499473 - 38499513
Alignment:
| Q |
115 |
tccaacgagttccatatgcaaagcttttgtgctgctaaatt |
155 |
Q |
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| T |
38499473 |
tccaatgagttccatatgcaaagcttttgtgctgctaaatt |
38499513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 208 - 272
Target Start/End: Original strand, 38474176 - 38474240
Alignment:
| Q |
208 |
caagagccaggttcaatcaagatgacatcaagttcaatttcataaagtgcaatcaatgttttaca |
272 |
Q |
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||||||||||||| ||||||||| |||| || ||||| ||||| |||||||||||| ||||||| |
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| T |
38474176 |
caagagccaggttgaatcaagataacattaacttcaaattcatcaagtgcaatcaacattttaca |
38474240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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