View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2964_low_17 (Length: 502)
Name: NF2964_low_17
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2964_low_17 |
 | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 80 - 494
Target Start/End: Complemental strand, 35928092 - 35927678
Alignment:
| Q |
80 |
tatcattatgaaatatgcagtggcgaacgtactcttcttggaatctccagcaggaataggattttcctactcaaatacaacttctgactatgacaagtca |
179 |
Q |
| |
|
||||||||||||||||||||| || || ||||| ||||| || |||||||||||| | ||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
35928092 |
tatcattatgaaatatgcagttgcaaatgtactattcttagagtctccagcaggagtgggattttcctattcaaacacaacttctgactatgacaagtca |
35927993 |
T |
|
| Q |
180 |
ggagataaatcaactgccaaggattcttacgtcttcctaatcaactggctggagagatttccacagtacaaaacaagagctttttacatagctggagaga |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35927992 |
ggagataaatcaactgccaaggattcttacgtcttcctaatcaactggctggagagatttccacagtacaaaacaagagctttttacatagctggagaga |
35927893 |
T |
|
| Q |
280 |
gttatgctggtcattatgttcctcaacttgcatcgactattcttcacaacaataaactctataacaacactgttattaacctcaaaggcatttctgtatg |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35927892 |
gttatgctggtcattatgttcctcaacttgcatcgactattcttcacaacaataaactctataacaacactgttattaacctcaaaggcatttctgtatg |
35927793 |
T |
|
| Q |
380 |
ttcttcaaacttcaaaagaccaagtatgaaatgtaactcacaatctcataaatctaacttcagtattatctttactttaaaaaatttcagatagggaatg |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35927792 |
ttcttcaaacttcaaaagaccaagtatgaaatgtaactcacaatctcataaatctaactttattattatctttactttaaaaaatttcagatagggaatg |
35927693 |
T |
|
| Q |
480 |
cttggattgatgatg |
494 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
35927692 |
cttggattgatgatg |
35927678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 21 - 494
Target Start/End: Complemental strand, 35910750 - 35910278
Alignment:
| Q |
21 |
atataattacattgtttctttatgatgcatttctgagacatgaatatcttacaaacttatatcattatgaaatatgcagtggcgaacgtactcttcttgg |
120 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
35910750 |
atataattacattgtttctt-atgatgcatttctgagacatgaatatcttaccaacttatatcattatgaaatatgcagtggcgaacgtactcttcttag |
35910652 |
T |
|
| Q |
121 |
aatctccagcaggaataggattttcctactcaaatacaacttctgactatgacaagtcaggagataaatcaactgccaaggattcttacgtcttcctaat |
220 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||| |||||||||||||| ||||||||||| ||||||||||| || | || |||||||| | |
|
|
| T |
35910651 |
aatctccagcaggagtaggattttcctactcaaacacaacatctgactatgacaaatcaggagataagtcaactgccaaagacacctatgtcttcctcgt |
35910552 |
T |
|
| Q |
221 |
caactggctggagagatttccacagtacaaaacaagagctttttacatagctggagagagttatgctggtcattatgttcctcaacttgcatcgactatt |
320 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
35910551 |
caactggctggagagatttccacaatacaaaaccagagatttttacataactggagagagttatgctggtcattatgttcctcaacttgcatccactatt |
35910452 |
T |
|
| Q |
321 |
cttcacaacaataaactctataacaacactgttattaacctcaaaggcatttctgtatgttcttcaaacttcaaaagaccaagtatgaaatgtaactcac |
420 |
Q |
| |
|
|| |||||||||||||||||||||||||| || ||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35910451 |
ctacacaacaataaactctataacaacaccattgttaacctcaaaggcatttctgtatgattttccaacttcaaaagaccaagtatgaaatgtaactcac |
35910352 |
T |
|
| Q |
421 |
aatctcataaatctaacttcagtattatctttactttaaaaaatttcagatagggaatgcttggattgatgatg |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35910351 |
aatctcataaatctaacttcagtattatctttactttaaaaaatttcagatagggaatgcttggattgatgatg |
35910278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 21 - 494
Target Start/End: Complemental strand, 35940527 - 35940058
Alignment:
| Q |
21 |
atataattacattgtttctttatgatgcatttctgagacatgaatatcttacaaacttatatcattatgaaatatgcagtggcgaacgtactcttcttgg |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35940527 |
atataattacattgtttctttatgatgcatttctgagacatgaatatcttacaaacttatatcattatgaaatatgcagtggcgaacgtactcttcttgg |
35940428 |
T |
|
| Q |
121 |
aatctccagcaggaataggattttcctactcaaatacaacttctgactatgacaagtcaggagataaatcaactgccaaggattcttacgtcttcctaat |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| || |||||||| || |
|
|
| T |
35940427 |
aatctccagcaggaataggattttcctactcaaacacaacatctgactatgacaaatcaggagataaatcaactgccaaggattcctatgtcttccttat |
35940328 |
T |
|
| Q |
221 |
caactggctggagagatttccacagtacaaaacaagagctttttacatagctggagagagttatgctggtcattatgttcctcaacttgcatcgactatt |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
35940327 |
caactggctggagagatttccacagtacaaaacaagagatttttacataagtggagagagttatgctggtcattatgttcctcaacttgcatccactatt |
35940228 |
T |
|
| Q |
321 |
cttcacaacaataaactctataacaacactgttattaacctcaaaggcatttctgtatgttcttcaaacttcaaaagaccaagtatgaaatgtaactcac |
420 |
Q |
| |
|
|| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||| || ||| ||| ||| |||| |
|
|
| T |
35940227 |
ctacacaacaataaactctataagaacaccattattaacctcaaaggcatttctgtatgttgatcaaacttcaaaagactaataatgcaatataaatcac |
35940128 |
T |
|
| Q |
421 |
aatctcataaatctaacttcagtattatctttactttaaaaaatttcagatagggaatgcttggattgatgatg |
494 |
Q |
| |
|
||||||||| ||||||||||| |||||| ||| | | |||||||||| |||||||||||||||||||||||| |
|
|
| T |
35940127 |
aatctcatatatctaacttca---ttatctgtacat-acaaaatttcagttagggaatgcttggattgatgatg |
35940058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 39 - 494
Target Start/End: Complemental strand, 35921540 - 35921085
Alignment:
| Q |
39 |
tttatgatgcatttctgagacatgaatatcttacaaacttatatcattatgaaatatgcagtggcgaacgtactcttcttggaatctccagcaggaatag |
138 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||||| || ||||||||||||||||||| || |||||||||||||||||||||||||| ||| |
|
|
| T |
35921540 |
tttatgatgcatttctgagacatgattatcttagaaacttaactccttatgaaatatgcagtggcaaatgtactcttcttggaatctccagcaggggtag |
35921441 |
T |
|
| Q |
139 |
gattttcctactcaaatacaacttctgactatgacaagtcaggagataaatcaactgccaaggattcttacgtcttcctaatcaactggctggagagatt |
238 |
Q |
| |
|
|||||||||||||||| ||| | || ||||||||||| ||||||||||| || ||||| || ||| | || ||||||||||||||||||||||||||||| |
|
|
| T |
35921440 |
gattttcctactcaaacacatcatcggactatgacaattcaggagataagtccactgctaaagatgcctatgtcttcctaatcaactggctggagagatt |
35921341 |
T |
|
| Q |
239 |
tccacagtacaaaacaagagctttttacatagctggagagagttatgctggtcattatgttcctcaacttgcatcgactattcttcacaacaataaactc |
338 |
Q |
| |
|
||||||||||||||| |||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
35921340 |
tccacagtacaaaaccagagatttttacataactggagagagttatgccggtcattatgttcctcaacttgcatccactattctttacaacaataaactc |
35921241 |
T |
|
| Q |
339 |
tataacaacactgttattaacctcaaaggcatttctgtatgttcttcaaacttcaaaagaccaagtatgaaatgtaactcacaatctcataaatctaact |
438 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |||||||||| || ||| || ||||||| |||||| ||||||||||| ||||| |
|
|
| T |
35921240 |
tataacaacaccattattaacctcaaaggcatttctgtatgttgttcaaacttcgaatgactaataatgaaatataactcgcaatctcataattctaatc |
35921141 |
T |
|
| Q |
439 |
tcagtattatctttactttaaaaaatttcagatagggaatgcttggattgatgatg |
494 |
Q |
| |
|
||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35921140 |
tcattattatctatacttaaaaaaatttcagatagggaatgcttggattgatgatg |
35921085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 35 - 494
Target Start/End: Complemental strand, 35915172 - 35914713
Alignment:
| Q |
35 |
tttctttatgatgcatttctgagacatgaatatcttacaaacttatatcattatgaaatatgcagtggcgaacgtactcttcttggaatctccagcagga |
134 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||| |||||||||| |||||||||||||||| || || |||||||||||||||||||| |||||| |
|
|
| T |
35915172 |
tttctttatgatgcatgcctgagacatgattatcttaccaacttatatccttatgaaatatgcagttgcaaatgtactcttcttggaatctccggcagga |
35915073 |
T |
|
| Q |
135 |
ataggattttcctactcaaatacaacttctgactatgacaagtcaggagataaatcaactgccaaggattcttacgtcttcctaatcaactggctggaga |
234 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||| ||||||||||| || || || || ||| | || || ||||| |||||||||||||||| |
|
|
| T |
35915072 |
gtaggattttcctactcaaacacaacatctgactatgacaattcaggagataagtccaccgctaaagatgcctatgttttcctcatcaactggctggaga |
35914973 |
T |
|
| Q |
235 |
gatttccacagtacaaaacaagagctttttacatagctggagagagttatgctggtcattatgttcctcaacttgcatcgactattcttcacaacaataa |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
35914972 |
gatttccacagtacaaaacaagagctttttacataactggagagagttatgctggtcactatgttccgcagcttgcatcgactattcttcacaacaataa |
35914873 |
T |
|
| Q |
335 |
actctataacaacactgttattaacctcaaaggcatttctgtatgttcttcaaacttcaaaagaccaagtatgaaatgtaactcacaatctcataaatct |
434 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||| || ||| ||| ||||| ||| ||||||||||| |
|
|
| T |
35914872 |
actctataacaacaccactattaacctcaaaggcatttctgtatgttgttcaaactttgaaagactaataatgcaatataactgtcaacctcataaatct |
35914773 |
T |
|
| Q |
435 |
aacttcagtattatctttactttaaaaaatttcagatagggaatgcttggattgatgatg |
494 |
Q |
| |
|
||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35914772 |
aactttatcattatctttacaataaaaaatttcagatagggaatgcttggattgatgatg |
35914713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 92 - 494
Target Start/End: Complemental strand, 35934893 - 35934492
Alignment:
| Q |
92 |
atatgcagtggcgaacgtactcttcttggaatctccagcaggaataggattttcctactcaaatacaacttctgactatgacaagtcaggagataaatca |
191 |
Q |
| |
|
||||||||| || || |||||||||| || |||||||||||| | ||||||||||||||||| ||||||||||||||| | || |||||||||| || |
|
|
| T |
35934893 |
atatgcagttgcaaatatactcttcttagagtctccagcaggagtgggattttcctactcaaacacaacttctgactataaaaaagcaggagataagtcc |
35934794 |
T |
|
| Q |
192 |
actgccaaggattcttacgtcttcctaatcaactggctggagagatttccacagtacaaaacaagagctttttacatagctggagagagttatgctggtc |
291 |
Q |
| |
|
||||| || ||| | || || ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
35934793 |
actgctaaagatgcctatgttttcctaatcaactggctggagagatttccacagtacaaaaccagagatttttacataactggagagagttatgctggtc |
35934694 |
T |
|
| Q |
292 |
attatgttcctcaacttgcatcgactattcttcacaacaataaactctataacaacactgttattaacctcaaaggcatttctgtatgttcttcaaactt |
391 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| || |||||||||||||||| || | ||||||||||||||||| |||||||||| |||| ||| |
|
|
| T |
35934693 |
attatgttcctcaacttgcatccactattcttcaccaccataaactctataacaaaaccatcattaacctcaaaggcatatctgtatgttgatcaatctt |
35934594 |
T |
|
| Q |
392 |
caaaagaccaagtatgaaatgtaactcacaatctcataaatctaacttcagtattatctttactttaaaaaatttcagatagggaatgcttggattgatg |
491 |
Q |
| |
|
|||||||| || ||| ||| |||||||| ||| |||| | ||||||||| ||||| | ||| || ||| |||||||||||||||||||||||||||| |
|
|
| T |
35934593 |
caaaagactaataatgcaatataactcactatcacatataactaacttcatgattatttgtac-ttcaaatttttcagatagggaatgcttggattgatg |
35934495 |
T |
|
| Q |
492 |
atg |
494 |
Q |
| |
|
||| |
|
|
| T |
35934494 |
atg |
35934492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 11084527 - 11084471
Alignment:
| Q |
255 |
agagctttttacatagctggagagagttatgctggtcattatgttcctcaacttgca |
311 |
Q |
| |
|
|||| ||| ||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11084527 |
agagatttctacattgctggagaaagttatgctggtcattatgttcctcaacttgca |
11084471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 225 - 304
Target Start/End: Complemental strand, 6208910 - 6208831
Alignment:
| Q |
225 |
tggctggagagatttccacagtacaaaacaagagctttttacatagctggagagagttatgctggtcattatgttcctca |
304 |
Q |
| |
|
||||| ||||||||||||||||| || || ||| ||| | ||||||||| || ||||||||||| |||||||||||||| |
|
|
| T |
6208910 |
tggcttgagagatttccacagtataagactcgagatttcttcatagctggtgaaagttatgctggccattatgttcctca |
6208831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 307
Target Start/End: Complemental strand, 6215780 - 6215695
Alignment:
| Q |
222 |
aactggctggagagatttccacagtacaaaacaagagctttttacatagctggagagagttatgctggtcattatgttcctcaact |
307 |
Q |
| |
|
|||||||| ||||||||||||||||| || | ||| ||| | |||| |||| || ||||||||||| |||||||| |||||||| |
|
|
| T |
6215780 |
aactggcttgagagatttccacagtataagattcgagatttcttcataactggtgaaagttatgctggccattatgtccctcaact |
6215695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 309
Target Start/End: Complemental strand, 316183 - 316145
Alignment:
| Q |
271 |
ctggagagagttatgctggtcattatgttcctcaacttg |
309 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
316183 |
ctggagaaagttatgctggacattatgttcctcaacttg |
316145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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