View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2964_low_18 (Length: 487)
Name: NF2964_low_18
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2964_low_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 19 - 471
Target Start/End: Original strand, 8075002 - 8075454
Alignment:
| Q |
19 |
agttgggtttgttagcaacttaaccattgaagataaacaatgatcagttcctttcacaagaagctttgatgttggagaaagagcatatgcttctttgttg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8075002 |
agttgggtttgttagcaacttaaccattgaagataaacaatgatcagttcctttcacaagaagctttgatgttggagaaagagcatatgcttctttgttg |
8075101 |
T |
|
| Q |
119 |
tcgtctatcttcacaattgcgaagattttattgtgcgccaacaaacgcatgacactatgaacacaaccggcttttgcttctggaattcgaagagccgaga |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8075102 |
tcgtctatcttcacaattgcgaagattttattgtgcgccaataaacgcatgacactgtgaacacaaccggcttttgcttctggaattcgaagagccgaga |
8075201 |
T |
|
| Q |
219 |
caagctcaggaagaatgataggtttgccatgattttggattatatctggtatgccaagttcaacagcccacttgatcgacacgggtctcaagaaactcaa |
318 |
Q |
| |
|
||||||| |||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
8075202 |
caagctcgggaagagtaataggtttgccatgattttgaattatatctggtatgccaagttcaacagcccacttgatcgacacgggtctcaagaaactaaa |
8075301 |
T |
|
| Q |
319 |
taactgattgtacaagtgagcttgaacttcaaagagttcacttgctttttgctcattctcagaacccatgaatgattattgaatcaattgagttcttgtg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8075302 |
taactgattgtacaagtgagcttgaacttcaaagagttcacttgctttgtgctcattctcagaacccatgaatgattattgaatcaattgagttcttgtg |
8075401 |
T |
|
| Q |
419 |
attatgtgaatgtgttgatatacattaacttagtttgcaatgctttatatagg |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8075402 |
attatgtgaatgtgttgatatacattaacttagtttgcaatgctttatatagg |
8075454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 23 - 469
Target Start/End: Original strand, 8066571 - 8067023
Alignment:
| Q |
23 |
gggtttgttagcaacttaaccattgaagataaacaatgatcagttcctttcacaagaagctttgatgttggagaaagagcatatgcttctttgttgtcgt |
122 |
Q |
| |
|
|||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8066571 |
gggtttgttaccatcttaaccattgaagttaaacaatgatcagttcctttcacaagaagctttgatgttggagaaagagcatatgcttctttgttgtcgt |
8066670 |
T |
|
| Q |
123 |
ctatcttcacaattgcgaagattttattgtgcgccaacaaacgcatgacactatgaacacaaccggcttttgcttctggaattcgaagagccgagacaag |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8066671 |
ctatcttcacaattgcgaagattttattgtgcgccaataaacgcatgacactatgaacacaaccggcttttgcttctggaattcgaagagccgagacaag |
8066770 |
T |
|
| Q |
223 |
ctcaggaagaatgataggtttgccatgattttggattatatctggtatgccaagttcaacagcccacttgatcgacacgggtctcaagaaactcaataac |
322 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| | |
|
|
| T |
8066771 |
ctcaggaagagtgataggtttgccatgattttggattatatctggtatgccaagttcaacagcccacttgatcgacacgggtctcatgaaactgaatatc |
8066870 |
T |
|
| Q |
323 |
tgattgtacaagtgagcttgaacttcaaagagttcacttgctttttgctcattctcagaacccatgaatg------attattgaatcaattgagttcttg |
416 |
Q |
| |
|
|||||||||| |||||||||| || ||||||| ||||||||||| | ||||||||||||| ||||||||| ||||||||||||| ||| |||||| |
|
|
| T |
8066871 |
tgattgtacaggtgagcttgagctacaaagagctcacttgctttgtactcattctcagaatccatgaatgattaatattattgaatcaaatgaattcttg |
8066970 |
T |
|
| Q |
417 |
tgattatgtgaatgtgttgatatacattaacttagtttgcaatgctttatata |
469 |
Q |
| |
|
||||||||||||| |||| ||||||||||| ||||||| | |||||||||||| |
|
|
| T |
8066971 |
tgattatgtgaatttgtttatatacattaatttagttttctatgctttatata |
8067023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University