View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2964_low_23 (Length: 442)

Name: NF2964_low_23
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2964_low_23
NF2964_low_23
[»] chr1 (3 HSPs)
chr1 (379-441)||(1162192-1162254)
chr1 (8-77)||(1162325-1162394)
chr1 (185-238)||(1162269-1162326)


Alignment Details
Target: chr1 (Bit Score: 59; Significance: 8e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 379 - 441
Target Start/End: Complemental strand, 1162254 - 1162192
Alignment:
Q  379 ttacatattgttgatagaattttcgttgtgtggctatttctactatctttatatctaaatttt 441  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1162254 ttacatattgttgatagaattttcattgtgtggctatttctactatctttatatctaaatttt 1162192  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 1162394 - 1162325
Alignment:
Q  8 ctatgcagaaaagaaatagaaaaactgtactataattattcatccatttaattatcttcaacggcaataa 77  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1162394 ctattcagaaaagaaaaagaaaaactgtactataattattcatccatttaattatcttcaacggctataa 1162325  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 1162326 - 1162269
Alignment:
Q  185 aacaaaaatctccactgtcctat----cctatctcatcaatttcttattcatctatat 238  Q
    |||||||||||||||||||||||    |||| |||||||||||| |||||||||||||    
T  1162326 aacaaaaatctccactgtcctatcctacctaactcatcaatttcctattcatctatat 1162269  T

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