View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2964_low_24 (Length: 437)

Name: NF2964_low_24
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2964_low_24
NF2964_low_24
[»] chr1 (9 HSPs)
chr1 (1-427)||(23922396-23922822)
chr1 (1-427)||(23914759-23915173)
chr1 (122-290)||(25802939-25803107)
chr1 (132-293)||(23995287-23995448)
chr1 (342-422)||(25803189-25803269)
chr1 (349-404)||(5253011-5253066)
chr1 (342-416)||(23989853-23989927)
chr1 (112-291)||(24436001-24436180)
chr1 (361-422)||(24436244-24436305)
[»] chr5 (2 HSPs)
chr5 (113-293)||(35074584-35074764)
chr5 (115-414)||(35079555-35079845)
[»] chr4 (2 HSPs)
chr4 (362-415)||(13435800-13435853)
chr4 (119-291)||(13435912-13436084)


Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 427
Target Start/End: Original strand, 23922396 - 23922822
Alignment:
Q  1 tcttcacaccttccaagtgcatctctatcagatctgatatccaagtctataagttccggttcttcaatcaatgcaacttttaattgaccaaccacactat 100  Q
    ||||||||||| ||||||||||| ||| || || |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||    
T  23922396 tcttcacacctaccaagtgcatcactagcatatttgatatccaagtctatagtgtccggttcttcaatcaatgcaacttttaattgaccaaccacactat 23922495  T
Q  101 tataatccttagcacattctttgatgggttgagaagaaggatattttttcataatttcgttaacttgttgttgggattttactgccttctttattgccgc 200  Q
    ||||||| | | ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23922496 tataatcatcaacacattctttgattggttgagaagaaggatattttttcataatttctttaacttgttgttgggattttactgccttctttattgccgc 23922595  T
Q  201 attctttaaaaatgacctggcaaaggtaagataatcttcgatcaaagtaattttagggtaagcttctataagtttcaaacaacgttgttcaaannnnnnn 300  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||           
T  23922596 attctttaaaaatgacctgacaaaggtaagataatcttcaatcaaagtaattttggggtaagcttctataagtttcaaacaacgttgttcaaagtctttt 23922695  T
Q  301 ngaccatttgctttgcatacattttggtacaatttggggcttggtgttggtgttggtgtcggtgaaatggcatgagaaacaaagatcattgaaatggtga 400  Q
     |||||  |||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  23922696 tgaccaggtgctttgcatacattttggtacaacttggggcttggtgctggtgttggtgttggtgaaatggcatgagaaacaaagatcattgaaatggtga 23922795  T
Q  401 gcaaaatggataaataggttgatgatg 427  Q
    |||||||||||||||||| ||| ||||    
T  23922796 gcaaaatggataaataggctgaagatg 23922822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 427
Target Start/End: Original strand, 23914759 - 23915173
Alignment:
Q  1 tcttcacaccttccaagtgcatctctatcagatctgatatccaagtctataagttccggttcttcaatcaatgcaacttttaattgaccaaccacactat 100  Q
    ||||||||||||||||||||||| ||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  23914759 tcttcacaccttccaagtgcatcactagcatatctgatatccaagtctataaggtccggttcttcaatcaatgcaacttttaattgaccaaccacactat 23914858  T
Q  101 tataatccttagcacattctttgatgggttgagaagaaggatattttttcataatttcgttaacttgttgttgggattttactgccttctttattgccgc 200  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||  |||||||||    
T  23914859 tataatcattagcacattctttgatgggttgagaagaaggatattttttcataatttctttaacttgttgttgggattttattgccttccctattgccgc 23914958  T
Q  201 attctttaaaaatgacctggcaaaggtaagataatcttcgatcaaagtaattttagggtaagcttctataagtttcaaacaacgttgttcaaannnnnnn 300  Q
    | |||||||||||||||||  ||||||||||||||||| |||||||||||||  ||||||| ||||||| ||||| | ||| |||||||| ||           
T  23914959 aatctttaaaaatgacctgcaaaaggtaagataatctttgatcaaagtaattggagggtaaccttctattagtttgagacagcgttgttcgaagtctttc 23915058  T
Q  301 ngaccatttgctttgcatacattttggtacaatttggggcttggtgttggtgttggtgtcggtgaaatggcatgagaaacaaagatcattgaaatggtga 400  Q
     |||||  |  ||||||||||||||||||||| ||| |||||||||||            |||||| ||||||| |||| ||||||||||||||||||||    
T  23915059 tgaccaggttgtttgcatacattttggtacaacttgaggcttggtgtt------------ggtgaattggcatgggaaataaagatcattgaaatggtga 23915146  T
Q  401 gcaaaatggataaataggttgatgatg 427  Q
    |||||||||||||||||||||| ||||    
T  23915147 gcaaaatggataaataggttgaagatg 23915173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 122 - 290
Target Start/End: Original strand, 25802939 - 25803107
Alignment:
Q  122 tgatgggttgagaagaaggatattttttcataatttcgttaacttgttgttgggattttactgccttctttattgccgcattctttaaaaatgacctggc 221  Q
    ||||||| | |||||||||||||||||   |||||||  | |||  |||||||||||||| |||||| | ||||||| || |||||||||||||||||      
T  25802939 tgatgggatcagaagaaggatatttttcagtaatttctctgactacttgttgggattttattgccttgtctattgccacaatctttaaaaatgacctgca 25803038  T
Q  222 aaaggtaagataatcttcgatcaaagtaattttagggtaagcttctataagtttcaaacaacgttgttc 290  Q
    |||||| |||||||||||||||||||| |||| |||||||| |||||| || ||||  |||||||||||    
T  25803039 aaaggttagataatcttcgatcaaagtgatttgagggtaagattctattagcttcaggcaacgttgttc 25803107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 132 - 293
Target Start/End: Complemental strand, 23995448 - 23995287
Alignment:
Q  132 agaagaaggatattttttcataatttcgttaacttgttgttgggattttactgccttctttattgccgcattctttaaaaatgacctggcaaaggtaaga 231  Q
    ||||||||| ||||| ||| | ||||| || ||||| ||||| | |||| |||| |||||||||||| || |||||| | || | |||| ||| ||||||    
T  23995448 agaagaagggtatttgttcttcatttctttgacttgatgttgagcttttcctgcattctttattgccacaatctttagatataatctggaaaatgtaaga 23995349  T
Q  232 taatcttcgatcaaagtaattttagggtaagcttctataagtttcaaacaacgttgttcaaa 293  Q
    ||||||||| || ||||||||| |||||| |||||||    |||||| || |||||||||||    
T  23995348 taatcttcggtcgaagtaatttgagggtaggcttctaatgttttcaagcagcgttgttcaaa 23995287  T

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Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 342 - 422
Target Start/End: Original strand, 25803189 - 25803269
Alignment:
Q  342 tggtgttggtgttggtgtcggtgaaatggcatgagaaacaaagatcattgaaatggtgagcaaaatggataaataggttga 422  Q
    ||||| ||||| |||||| |||||||| |||||||||| ||| ||||||||||||||||||||||  |||||||| |||||    
T  25803189 tggtgatggtgatggtgttggtgaaatagcatgagaaataaacatcattgaaatggtgagcaaaaatgataaatatgttga 25803269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 349 - 404
Target Start/End: Complemental strand, 5253066 - 5253011
Alignment:
Q  349 ggtgttggtgtcggtgaaatggcatgagaaacaaagatcattgaaatggtgagcaa 404  Q
    ||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||    
T  5253066 ggtgttggtgttggtgaaatggcatgagaaatagagatcattgaaatggtgagcaa 5253011  T

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Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 342 - 416
Target Start/End: Complemental strand, 23989927 - 23989853
Alignment:
Q  342 tggtgttggtgttggtgtcggtgaaatggcatgagaaacaaagatcattgaaatggtgagcaaaatggataaata 416  Q
    |||||| ||||||||||| ||||||||||||||||||| |||| ||||||| |||||||| || | |||||||||    
T  23989927 tggtgtgggtgttggtgttggtgaaatggcatgagaaataaagttcattgagatggtgagtaacaaggataaata 23989853  T

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Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 112 - 291
Target Start/End: Original strand, 24436001 - 24436180
Alignment:
Q  112 gcacattctttgatgggttgagaagaaggatattttttcataatttcgttaacttgttgttgggattttactgccttctttattgccgcattctttaaaa 211  Q
    |||||| ||||||||| ||||||||||||||| |||||| | ||||| || ||||| ||||||| ||||  ||| |||| ||||||| || || ||||||    
T  24436001 gcacatcctttgatggtttgagaagaaggatactttttcttcatttctttgacttgatgttgggcttttgttgcattctctattgccacaatccttaaaa 24436100  T
Q  212 atgacctggcaaaggtaagataatcttcgatcaaagtaattttagggtaagcttctataagtttcaaacaacgttgttca 291  Q
    || | || | ||| || |||||||||| |    |||||||||  ||||| | ||||| ||||||||  ||| ||||||||    
T  24436101 ataatcttgaaaaagttagataatctttggcagaagtaatttgtgggtagggttctaaaagtttcaggcaaggttgttca 24436180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 422
Target Start/End: Original strand, 24436244 - 24436305
Alignment:
Q  361 ggtgaaatggcatgagaaacaaagatcattgaaatggtgagcaaaatggataaataggttga 422  Q
    ||||||||||| ||||||| |||||||||||| ||||||||||| | ||||| ||| |||||    
T  24436244 ggtgaaatggcgtgagaaataaagatcattgatatggtgagcaataaggatagatatgttga 24436305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 113 - 293
Target Start/End: Original strand, 35074584 - 35074764
Alignment:
Q  113 cacattctttgatgggttgagaagaaggatattttttcataatttcgttaacttgttgttgggattttactgccttctttattgccgcattctttaaaaa 212  Q
    |||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||| ||||||| || ||||||||||    
T  35074584 cacattctttgatgggttgagaagaaggatatttgttcataatctctttaacttgttgttgggattttactgccttctctattgccacaatctttaaaaa 35074683  T
Q  213 tgacctggcaaaggtaagataatcttcgatcaaagtaattttagggtaagcttctataagtttcaaacaacgttgttcaaa 293  Q
    |||||||  ||| || ||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||    
T  35074684 tgacctgcaaaaagttagataatcttcgatcaaagtaatttgagggtaagcttctataagtttgagacaacgttgttcaaa 35074764  T

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Target: chr5; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 115 - 414
Target Start/End: Original strand, 35079555 - 35079845
Alignment:
Q  115 cattctttgatgggttgagaagaaggatattttttcataatttcgttaacttgttgttgggattttactgccttctttattgccgcattctttaaaaatg 214  Q
    ||||||||||| ||||||||||||||||||||||||| |||||| || ||| | ||||||||||||| |||||||||||||||| || |||||||||| |    
T  35079555 cattctttgataggttgagaagaaggatattttttcacaatttctttgactcgatgttgggattttattgccttctttattgccacagtctttaaaaagg 35079654  T
Q  215 acctggcaaaggtaagataatcttcgatcaaagtaattttagggtaagcttctataagtttcaaacaacgttgttcaaannnnnnnngaccatttgcttt 314  Q
    |||||  |||||| |||||||||| |||||| ||||||||||||||||||||||||||||| | |||||||||||| ||        ||| |  | ||||    
T  35079655 acctgcaaaaggttagataatctttgatcaaggtaattttagggtaagcttctataagtttgagacaacgttgttcgaattctttctgacgaggttcttt 35079754  T
Q  315 gcatacattttggtacaatttggggcttggtgttggtgttggtgtcggtgaaatggcatgagaaacaaagatcattgaaatggtgagcaaaatggataaa 414  Q
     |||||| ||| |||||| ||||||||||||||||||          ||||||||||||| |||| |||||||||||||||   |||||||| |||||||    
T  35079755 acatacacttttgtacaacttggggcttggtgttggt---------agtgaaatggcatgggaaataaagatcattgaaataacgagcaaaacggataaa 35079845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 362 - 415
Target Start/End: Complemental strand, 13435853 - 13435800
Alignment:
Q  362 gtgaaatggcatgagaaacaaagatcattgaaatggtgagcaaaatggataaat 415  Q
    |||||||||| ||||||| |||||||||||| ||||||||||| | ||||||||    
T  13435853 gtgaaatggcgtgagaaataaagatcattgatatggtgagcaataaggataaat 13435800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 291
Target Start/End: Complemental strand, 13436084 - 13435912
Alignment:
Q  119 ctttgatgggttgagaagaaggatattttttcataatttcgttaacttgttgttgggattttactgccttctttattgccgcattctttaaaaatgacct 218  Q
    ||||||||| ||||||||| |||||||||||| | ||||| || ||||  ||||||  ||||  ||| || | ||||||| || || |||||||| | ||    
T  13436084 ctttgatggcttgagaagagggatattttttcgtcatttctttgactttatgttggacttttgttgcattatctattgccacaatccttaaaaataatct 13435985  T
Q  219 ggcaaaggtaagataatcttcgatcaaagtaattttagggtaagcttctataagtttcaaacaacgttgttca 291  Q
     | ||||||||||||||||  |    |||||||||  ||||| | ||||| ||||||||| ||| ||||||||    
T  13435984 tgaaaaggtaagataatctatggctgaagtaatttgtgggtaggtttctaaaagtttcaagcaaggttgttca 13435912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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