View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2964_low_29 (Length: 421)
Name: NF2964_low_29
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2964_low_29 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 11 - 421
Target Start/End: Complemental strand, 27702889 - 27702478
Alignment:
| Q |
11 |
caaaggacttaccatttgtatgtatcagacaaaaaattatgagtctgtttcggtactgtttctatcatgataccattccgattatataatccggactatt |
110 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||| | |||||||||||||||||||||||| |||||| |
|
|
| T |
27702889 |
caaaggacttaccatttgtatgtatcacacaaaaaataatgagtctgtttcggtactgtttcaatcctaataccattccgattatataatccgaactatt |
27702790 |
T |
|
| Q |
111 |
ttatgacttttcagattatataatccaaaatgtgnnnnnnnacaccacaatttgcctcttttagggtgttttacacttttcggattacataagccgaatt |
210 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27702789 |
ttatgacttttcagattatataatccgaaatgtgtgtttttacaccacaatttgcctcttttagggtgttttacacttttcggattacataagccgaatt |
27702690 |
T |
|
| Q |
211 |
atttaaggggtttcagattgtagtttccaaactgtatgtttatagagacctatacaaacattagcagggtg-tttgtcttataatagtttttatcctttt |
309 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
27702689 |
atttaagggatttcagattgtagtttccgaactgtatgtttatagagacctatacaaacattagcagggtgttttgttttataatagtttttatcctttt |
27702590 |
T |
|
| Q |
310 |
cagattatataatctgaaatgttgctcatgttattgaatccgaacaaatggtattttagaaggnnnnnnntaaggtgtgcgataaaaccataggatgaga |
409 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||| ||||| |||||| ||||||||| | |
|
|
| T |
27702589 |
cagattatataatctgaaatgttgttcatgttattgaatctgaacaaatggtattttagaaggaaaaaaataagatgtgcaataaaatcataggatggaa |
27702490 |
T |
|
| Q |
410 |
aaagtaatagtc |
421 |
Q |
| |
|
|||||||||||| |
|
|
| T |
27702489 |
aaagtaatagtc |
27702478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 152 - 322
Target Start/End: Complemental strand, 39811103 - 39810931
Alignment:
| Q |
152 |
acaccacaatttgcctcttttagggtgttttacacttttcggattacataagccgaatta-tttaaggggtttcagattgtagtttccaaactgtatgtt |
250 |
Q |
| |
|
||||||||||||||||||| ||| |||||| | ||||||| ||||| ||||||| ||||| |||||||||||||||||| |||||| || ||||||| |
|
|
| T |
39811103 |
acaccacaatttgcctcttctagagtgtttgatacttttcagattatataagccaaattattttaaggggtttcagattatagtttatgaatcgtatgtt |
39811004 |
T |
|
| Q |
251 |
tatagagacctatacaaacattagcagggtg-tttgtcttataatagtttttatccttttcagattatataat |
322 |
Q |
| |
|
|| ||||||| |||||||| |||| |||| |||||||| || | |||||||||||||| |||||||||| |
|
|
| T |
39811003 |
tactaagacctacacaaacataagcatggtgctttgtcttccaacaatttttatccttttcgaattatataat |
39810931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 7143441 - 7143526
Alignment:
| Q |
152 |
acaccacaatttgcctcttttagggtgttttacacttttcggattacataagccgaattattt-aaggggtttcagattgtagttt |
236 |
Q |
| |
|
|||||| | |||| ||||||| |||||||| ||| ||||| ||||| |||||||||||| ||| || |||||||| ||| |||||| |
|
|
| T |
7143441 |
acaccatagtttgtctcttttggggtgtttgacaattttcagattatataagccgaattttttcaaagggtttcaaattatagttt |
7143526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 8682637 - 8682722
Alignment:
| Q |
152 |
acaccacaatttgcctcttttagggtgttttacacttttcggattacataagccgaa-ttatttaaggggtttcagattgtagttt |
236 |
Q |
| |
|
|||||| | |||| ||||||| |||||||| ||| ||||| ||||| |||||||||| || ||||| |||||||| ||| |||||| |
|
|
| T |
8682637 |
acaccatagtttgtctcttttggggtgtttgacaattttcagattatataagccgaatttttttaaagggtttcaaattatagttt |
8682722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University