View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2964_low_31 (Length: 419)
Name: NF2964_low_31
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2964_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 8 - 402
Target Start/End: Complemental strand, 47144874 - 47144488
Alignment:
| Q |
8 |
tgagaagaatgattatgttttatgtgtggttggttcaaagggtatatgctagtgccatcnnnnnnnnncccatcatggtctaatttttgcttaacaatat |
107 |
Q |
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| T |
47144874 |
tgagaacaatgattatgttttatgtgtggttggttcaaagggtatatgctagtgccatctttttttt-cccatcatggtctaatttttgcttaataatat |
47144776 |
T |
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| Q |
108 |
cgatattttgtcatttatacattagtatatttgtaaataatgtttgacagcatattgctccaacaagttgaaatttattgatccttgtttctacaaaaat |
207 |
Q |
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| T |
47144775 |
cgatattttgtcatttatacattagtatatttgtaaataatgtttgacagcatattgctccaacaaattgaaatttattgatccttgtttctacaaaaat |
47144676 |
T |
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| Q |
208 |
gcaataaactagttactagtagttactagttagtactagtaggggatgagtagctcatatgttaagctaatggattagagaaattaaagagttaaagata |
307 |
Q |
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| T |
47144675 |
acaataaactagttactagtagtta-------gtactagtaggggatgagtagctcatatgttaagctaatggattagagaaattaaagagttaaagata |
47144583 |
T |
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| Q |
308 |
taggtccatggaaaatgaaaggtttgaagcatttaacaaccttgctgtaataaacggtgtatttatgcattttgtgtgactgagacatgtcatag |
402 |
Q |
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| T |
47144582 |
taggtccatggaaaatgaaaggtctgaagcatttaacaaccttgctgtaataaacggtgtatttatgcattttgtgtgactgagacatgtcatag |
47144488 |
T |
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