View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2964_low_34 (Length: 412)
Name: NF2964_low_34
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2964_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 45 - 398
Target Start/End: Complemental strand, 11003607 - 11003258
Alignment:
| Q |
45 |
acattttcttttaaacatggtataaatggtaaacaattatccctctactccctgcctcatcgtctaatctacaatcacagacaga--agaagnnnnnnnc |
142 |
Q |
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| T |
11003607 |
acattttcttttaaacatggtataaatggtcaacaattatccctctactccctgcctcatcgtctaatctacaatcacagacagagaagaagaaaaaaac |
11003508 |
T |
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| Q |
143 |
tttgaggaagtcgtctggagaaaattacctaaaggtgcacaacgacgacgttggttattgtaatagaggatgtctgaataccaaccatgtttacaaagac |
242 |
Q |
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| T |
11003507 |
tttgaggaagtcgtttggagaaaattacctgaaggtgcac------gacgttggttattgtaatcgaggatgtctgaataccaaccatgtttacaaagac |
11003414 |
T |
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| Q |
243 |
tattgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtacaagaaatgttgttgttgccaccatgcttaaaatcccaagatgtaag |
342 |
Q |
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| T |
11003413 |
tattgagccatgaaagttcaaatccataaaacatcatacgatgaatatccgtacaagaaatgttgttgtttccaccatgcttaaaatcccaagatgtaag |
11003314 |
T |
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| Q |
343 |
aaacatcaactctatacgacactcatctcccagagccaattccaaaagagatttgt |
398 |
Q |
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| T |
11003313 |
aaacatcaactctatacgacactcatctcccagagccaattccaaaagagatttgt |
11003258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 144 - 394
Target Start/End: Complemental strand, 11000532 - 11000285
Alignment:
| Q |
144 |
ttgaggaagtcgtctggagaaaattacctaaaggtgcacaacgacgacgttggttattgtaatagaggatgtctgaataccaaccatgtttacaaagact |
243 |
Q |
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| T |
11000532 |
ttgaggaagtcgtttggagaaaattacctaaacgtgcacaaccacgacgttggttattgtaatcgaggatttctgaataccaaccatgtttacaaaggct |
11000433 |
T |
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| Q |
244 |
attgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtacaagaaatgttgttgttgccaccatgcttaaaatcccaagatgtaaga |
343 |
Q |
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| T |
11000432 |
attgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtgcaaaaaatgtt---gttgccaccatgttcaaaaggccaagatgtaaga |
11000336 |
T |
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| Q |
344 |
aacatcaactctatacgacactcatctcccagagccaattccaaaagagat |
394 |
Q |
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| T |
11000335 |
aacatcaactctatacgacatccatctcctagaccaaattccaaaagagat |
11000285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 220 - 310
Target Start/End: Original strand, 11009082 - 11009172
Alignment:
| Q |
220 |
ataccaaccatgtttacaaagactattgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtacaagaaatgttgttg |
310 |
Q |
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| T |
11009082 |
ataccgaccatgtttacaccgactgttgagccaagaaagttcaaatccataatacatcctacgacgaatgtctgtacaagaaatgttgttg |
11009172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 232 - 313
Target Start/End: Original strand, 11034495 - 11034576
Alignment:
| Q |
232 |
tttacaaagactattgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtacaagaaatgttgttgttg |
313 |
Q |
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| T |
11034495 |
tttacaaaaactgttgagccaagaaagttcaaatccataaaacatctcacgacggatatccgcgcaagaaatgttgttgttg |
11034576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 214 - 312
Target Start/End: Original strand, 10921610 - 10921708
Alignment:
| Q |
214 |
gtctgaataccaaccatgtttacaaagactattgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtacaagaaatgttgttgtt |
312 |
Q |
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| T |
10921610 |
gtctgcataccatccatctttacaaaaactgttgagccaagaaagttcaaatccataaaagatctcacgacggatgtctgtgcatgaaatgttgttgtt |
10921708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 306
Target Start/End: Original strand, 10975113 - 10975204
Alignment:
| Q |
215 |
tctgaataccaaccatgtttacaaagactattgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtacaagaaatgtt |
306 |
Q |
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| T |
10975113 |
tctgcataccgaccatgattgcaaatactattgagccaagaaaattcaaatccataatacatcatacgacggaagtccttgcaagaaatgtt |
10975204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 220 - 306
Target Start/End: Original strand, 10905207 - 10905293
Alignment:
| Q |
220 |
ataccaaccatgtttacaaagactattgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtacaagaaatgtt |
306 |
Q |
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| T |
10905207 |
ataccaaccatgattgtaaatactattgagccaagaaaattcaaatccataatacatcatacgacggaagtccttgcaagaaatgtt |
10905293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 223 - 313
Target Start/End: Original strand, 10987980 - 10988070
Alignment:
| Q |
223 |
ccaaccatgtttacaaagactattgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtacaagaaatgttgttgttg |
313 |
Q |
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| T |
10987980 |
ccaatcatctttacaaagactattgagccaagagacttcaaatccataagacatcatacggttgatgtccgtgcaagaaatgttattgttg |
10988070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 223 - 313
Target Start/End: Original strand, 11019148 - 11019238
Alignment:
| Q |
223 |
ccaaccatgtttacaaagactattgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtacaagaaatgttgttgttg |
313 |
Q |
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| T |
11019148 |
ccaatcatctttacaaagactattgagccaagagacttcaaatccataagacatcatacggttgatgtccgtgcaagaaatgttattgttg |
11019238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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