View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2964_low_35 (Length: 389)
Name: NF2964_low_35
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2964_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 17 - 376
Target Start/End: Original strand, 34738689 - 34739044
Alignment:
| Q |
17 |
acaaggaaggaatatatagtagccaactttaattttgccttttgttattgttttttaatttccccaagtttgagaagagttatgagtaagacgcaaacag |
116 |
Q |
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| T |
34738689 |
acaaggaaggaatatatagtagccaactttaattttgccttttgttattgttttttaatttccccaagtttgagaagagttatgagtaagacgcaaacag |
34738788 |
T |
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| Q |
117 |
acatgttgacggtattacacttctctgccaccaagtcattccacaaaaactttcaagatatgcannnnnnncttaacatctccaaacttcaatctatata |
216 |
Q |
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| T |
34738789 |
acatgttgacggtattacacttctctgccaccaagtcattccacaaaaactttcaagatatgcatttttttcttaacatctccaaacttcaatc----ta |
34738884 |
T |
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| Q |
217 |
tacacttcttatttttcttcaaaaataatatagaaaaggattgtgctttattgactttcagttggtgcttttgaataatttaatttaatctatcaaggac |
316 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34738885 |
tacacttcttatttttcttcaaaaataaaatagaaaaggattgtgctttattgactttcagttggtgcttttgaataatttaatttaatctatcaaggac |
34738984 |
T |
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| Q |
317 |
tttgctagaaccaaattaattaaaacaaaactcataatcaataatgttaatattcatctc |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34738985 |
tttgctagaaccaaattaattaaaacaaaactcataatcaataatgttaatattcttctc |
34739044 |
T |
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