View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2964_low_39 (Length: 382)
Name: NF2964_low_39
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2964_low_39 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 38663489 - 38663818
Alignment:
| Q |
1 |
atgtcacatttcttgttacccacactgcttgaatatataataaaatatggtgggcccaattttaaattatggcttaattacataaataatttgttgtttt |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38663489 |
atgtcacagttcttgttacccacactgcttgaatatataataaaatatggtgggcccaattttaaattatggcttaattacataaataatttgttgtttt |
38663588 |
T |
|
| Q |
101 |
ttatttggtcccctaactcnnnnnnnnnntttccattcggtcccttaaatatgttttgtcagtcaaattgatacaatccgttaatttttccaaagtctaa |
200 |
Q |
| |
|
| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| || ||||| |
|
|
| T |
38663589 |
t-atttgttcccctaactctaatttttt-tttccattcggtcccttaaatatgttttgtcagtcaaattgatagagtccgttaatttttctaatgtctag |
38663686 |
T |
|
| Q |
201 |
tatttcagatgtgatttcagtcattatattgtaagttcattgcatgtaacactgatctaccaacacctaatttgtttcactttttatcatcttccctctt |
300 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||| ||||||||||||| | ||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38663687 |
tatttcagatgtgatttcagttattatattgtacgtttattgcatgtaacagttatccaccaacacctaatttgtttcacttttcatcatcttccctctt |
38663786 |
T |
|
| Q |
301 |
ctttcttcctcatcatcaacaacaacacctaa |
332 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |
|
|
| T |
38663787 |
ctttcttcctcatcatcaacaacagcacctaa |
38663818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 313
Target Start/End: Complemental strand, 45395935 - 45395887
Alignment:
| Q |
264 |
cacctaatttgtttcactttttatcatcttccctcttctttcttcctcat |
313 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
45395935 |
cacctaatttttttcacttttcatcatcttccctcttc-ttcttcctcat |
45395887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 139 - 231
Target Start/End: Original strand, 29861572 - 29861663
Alignment:
| Q |
139 |
ggtcccttaaatatgttttgtcagtcaaattgatacaatccgttaatttttccaaagtctaatatttcagatgtgatttcagtcattatattg |
231 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| || ||||||| ||||| | ||||||||||| ||||| |||||||| ||||| |||| |
|
|
| T |
29861572 |
ggtcccttaaatatgttccgtcagtcaaattgatccattccgttagttttt-ttatgtctaatattttagatgcgatttcagccattagattg |
29861663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 273
Target Start/End: Original strand, 35563104 - 35563182
Alignment:
| Q |
195 |
gtctaatatttcagatgtgatttcagtcattatattgtaagttcattgcatgtaacactgatctaccaacacctaattt |
273 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| |||| | || ||| | ||||||| ||||||||||| | ||||||| |
|
|
| T |
35563104 |
gtctaatattttagatgtgatttcagccattagattgcaggtccatcgtatgtaacggtgatctaccaatatctaattt |
35563182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University