View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2964_low_4 (Length: 695)

Name: NF2964_low_4
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2964_low_4
NF2964_low_4
[»] chr7 (6 HSPs)
chr7 (20-670)||(40451712-40452362)
chr7 (302-663)||(41242333-41242693)
chr7 (349-514)||(17263095-17263259)
chr7 (279-387)||(43655947-43656055)
chr7 (421-501)||(22358972-22359052)
chr7 (148-192)||(41242163-41242206)
[»] chr1 (3 HSPs)
chr1 (320-663)||(11798253-11798595)
chr1 (320-663)||(10349083-10349426)
chr1 (148-192)||(20819603-20819646)
[»] chr2 (4 HSPs)
chr2 (262-615)||(3202312-3202664)
chr2 (405-670)||(22858900-22859165)
chr2 (148-192)||(2220097-2220140)
chr2 (278-338)||(34468294-34468354)
[»] chr4 (11 HSPs)
chr4 (280-663)||(13159848-13160230)
chr4 (253-334)||(16736320-16736401)
chr4 (148-192)||(13159699-13159742)
chr4 (148-192)||(16736169-16736213)
chr4 (348-496)||(22322626-22322773)
chr4 (148-192)||(46191195-46191238)
chr4 (149-225)||(20177379-20177456)
chr4 (148-181)||(135821-135854)
chr4 (148-224)||(36825778-36825855)
chr4 (472-532)||(28708835-28708895)
chr4 (148-192)||(44546662-44546705)
[»] chr3 (3 HSPs)
chr3 (277-643)||(7639030-7639397)
chr3 (148-192)||(7638885-7638928)
chr3 (472-532)||(25280737-25280797)
[»] scaffold0074 (1 HSPs)
scaffold0074 (274-531)||(36181-36437)
[»] chr5 (4 HSPs)
chr5 (276-520)||(23256859-23257102)
chr5 (148-192)||(21825240-21825284)
chr5 (148-192)||(23257199-23257242)
chr5 (148-192)||(37268367-37268410)
[»] chr6 (3 HSPs)
chr6 (405-484)||(5195283-5195362)
chr6 (471-532)||(5675831-5675892)
chr6 (148-192)||(16477626-16477670)


Alignment Details
Target: chr7 (Bit Score: 485; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 20 - 670
Target Start/End: Original strand, 40451712 - 40452362
Alignment:
Q  20 ttctagtgaatagtgattgtaatgtttttattttctttcatataatggaaacaaatattgagttaaggtaggttcagtgtagttatttcgctcatgaaag 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  40451712 ttctagtgaatagtgattgtaatgtttttattttctttcatataatggaaacaaatattgagttaaggtaggttcagtgtagttatttcgcttatgaaag 40451811  T
Q  120 caataaaagtgttggnnnnnnnnnnnnnaacaaatcaaaatggattatattgctcaaacgaataagtgattcatc-cgcataagatatgttaaagtgata 218  Q
    |||||||||||||||             |||||||||||||||||||||||| |||||||||||||||||||| | |  ||||  | || ||||||||||    
T  40451812 caataaaagtgttggattttatttttttaacaaatcaaaatggattatattgttcaaacgaataagtgattcacctcaaataaagtgtgctaaagtgata 40451911  T
Q  219 aatcacacattctgttcataatagaaggttgccaccaccaactcaaaacaaaaagacaaaattacatgccacccatacaaagaaatggatgcctccacta 318  Q
    ||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  40451912 aatcacacaatctgttcataccagaaggttgccaccaccaactcaaaacaaaaagacaaaattacatgccacccatacgaagaaatggatgcctccacta 40452011  T
Q  319 gtcatgaaaactaaaagctagcggaatgcaattcgaagagagccaaagaaaggaattgaacttcactttatcaaggatgctttgggggatctattaccgc 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  40452012 gtcatgaaaactaaaagctagcggaatgcaattcgaagagagccaaagaaaggaattgaacttcactttatcaaggatgctttgggg-atctattaccgc 40452110  T
Q  419 atttttgaagacacagttgttccgagctttccaaattgcacgaataaaagcgagccaaatcaccttaaaataaaaatgggaagatctcagcatacccgcc 518  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  40452111 atttttgaagacacagttgttccgagctttccaaattgcacaaatagaagcgagccaaatcaccttaaaataaaaatgggaagatctcggcatacccgcc 40452210  T
Q  519 aaattagtaaactgtaaaaagtaatcggttaccaatcctgaaggaacatatgagatgccaagccaattacaaaccaaatacctaacactcccaaaaatgt 618  Q
    |||||||||||||||||||||| ||  |||||||||||| ||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  40452211 aaattagtaaactgtaaaaagtgattagttaccaatcctaaagaaacatatgagatgccaagccaattacaaatcaaataccaaacactcccaaaaatgt 40452310  T
Q  619 tgcagccaatgaaaagatgatccgccgtctctaaatttccacacctaccgac 670  Q
    |||||||||||||||||| ||| || | ||||||||||||||||| ||||||    
T  40452311 tgcagccaatgaaaagataatctgcaggctctaaatttccacacccaccgac 40452362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 302 - 663
Target Start/End: Original strand, 41242333 - 41242693
Alignment:
Q  302 aatggatgcctccactagtcatgaaaactaaaagctagcggaatgcaattcgaagagagccaaagaaaggaattgaacttcactttatcaaggatgcttt 401  Q
    |||||||| |||||| | |||||||||| |||||||| || ||| | ||||||| | |||||||  || ||||    ||||||||| ||||| ||| |||    
T  41242333 aatggatgtctccaccaatcatgaaaaccaaaagctaacgaaatacgattcgaatatagccaaaagaaagaatcccgcttcactttttcaagaatgattt 41242432  T
Q  402 gggggatctattaccgcatttttgaagacacagttgttccgagctttccaaattgcacgaataaaagcgagccaaatcaccttaaaataaaaatgggaag 501  Q
    | || ||||||||||||||||||||| | |||||| || ||| | ||||||||||| |  ||| ||||||||||||||||||| ||| ||  ||| |||     
T  41242433 gagg-atctattaccgcatttttgaatatacagttatttcgatccttccaaattgcccatatagaagcgagccaaatcaccttgaaaaaagtatgagaaa 41242531  T
Q  502 atctcagcatacccgccaaattagtaaactgtaaaaagtaatcggttaccaatcctgaaggaacatatgagatgccaagccaattacaaaccaaatacct 601  Q
    ||||| |||||| |||||  ||  ||||||| | ||||| ||| |  | |   | ||||||||||||  | |||||||||||||||||||  || ||||     
T  41242532 atctcggcatactcgccatgttgctaaactgcagaaagtgatcagaaagctgacatgaaggaacataacaaatgccaagccaattacaaattaagtacca 41242631  T
Q  602 aacactcccaaaaatgttgcagccaatgaaaagatgatccgccgtctctaaatttccacacc 663  Q
    |||||| ||||||| ||| || ||||  |||||||||||||| ||||| |  ||||||||||    
T  41242632 aacacttccaaaaaggttacaaccaagaaaaagatgatccgctgtctcaatgtttccacacc 41242693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 349 - 514
Target Start/End: Complemental strand, 17263259 - 17263095
Alignment:
Q  349 attcgaagagagccaaagaaaggaattgaacttcactttatcaaggatgctttgggggatctattaccgcatttttgaagacacagttgttccgagcttt 448  Q
    ||||||||| | ||| | ||||||||| ||||||||||| ||||| |  || | | ||||| |||||||||||||| || ||||||||||| | | | ||    
T  17263259 attcgaagataaccataaaaaggaattcaacttcactttttcaagaacactgt-gaggatcgattaccgcattttttaatacacagttgtttctatcctt 17263161  T
Q  449 ccaaattgcacgaataaaagcgagccaaatcaccttaaaataaaaatgggaagatctcagcatacc 514  Q
    ||| ||||| | |  | |||| |||||||| ||||||||||||| ||| | || |||| |||||||    
T  17263160 ccatattgcccaagcacaagcaagccaaatgaccttaaaataaagatgagcagctctcggcatacc 17263095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 279 - 387
Target Start/End: Complemental strand, 43656055 - 43655947
Alignment:
Q  279 attacatgccacccatacaaagaaatggatgcctccactagtcatgaaaactaaaagctagcggaatgcaattcgaagagagccaaagaaaggaattgaa 378  Q
    |||||||| ||||||||||||| | |||||| |||||| | |||||||||| ||||||||  |  |   | |||||||| |||||||| |||||||| ||    
T  43656055 attacatgacacccatacaaaggagtggatgtctccaccaatcatgaaaaccaaaagctaaagacacatagttcgaagatagccaaaggaaggaatttaa 43655956  T
Q  379 cttcacttt 387  Q
    ||| |||||    
T  43655955 ctttacttt 43655947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 421 - 501
Target Start/End: Original strand, 22358972 - 22359052
Alignment:
Q  421 ttttgaagacacagttgttccgagctttccaaattgcacgaataaaagcgagccaaatcaccttaaaataaaaatgggaag 501  Q
    ||||||||||| ||||||| |   |||| |||||||| | |||| |||| |||||||| ||||||| ||||||||| ||||    
T  22358972 ttttgaagacatagttgtttctctcttttcaaattgcccaaatacaagcaagccaaataaccttaagataaaaatgagaag 22359052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 41242163 - 41242206
Alignment:
Q  148 aacaaatcaaaatggattatattgctcaaacgaataagtgattca 192  Q
    |||||||||||||||| |||||| |||||||||| ||||||||||    
T  41242163 aacaaatcaaaatggaatatattactcaaacgaa-aagtgattca 41242206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 320 - 663
Target Start/End: Complemental strand, 11798595 - 11798253
Alignment:
Q  320 tcatgaaaactaaaagctagcggaatgcaattcgaagagagccaaagaaaggaattgaacttcactttatcaaggatgctttgggggatctattaccgca 419  Q
    ||||||||||||||||| |  ||||| | |||||||||||| |||||||||||||| ||||||||| |||||||||||||||| || |||||||||||||    
T  11798595 tcatgaaaactaaaagcaaatggaataccattcgaagagagtcaaagaaaggaattaaacttcactatatcaaggatgctttgagg-atctattaccgca 11798497  T
Q  420 tttttgaagacacagttgttccgagctttccaaattgcacgaataaaagcgagccaaatcaccttaaaataaaaatgggaagatctcagcatacccgcca 519  Q
    ||||||||||||| |||||||||   |||||||||||| | |||| || |||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  11798496 tttttgaagacacggttgttccgttttttccaaattgcccaaatagaatcgagccaaatcaccttaaaataaatatgggaagatctcggcatacccgcca 11798397  T
Q  520 aattagtaaactgtaaaaagtaatcggttaccaatcctgaaggaacatatgagatgccaagccaattacaaaccaaatacctaacactcccaaaaatgtt 619  Q
    | ||||||||||||||||||| ||| ||||||||||||||||||||||| || ||| ||||||||||||||| |||||||| ||||||||||||||||||    
T  11798396 agttagtaaactgtaaaaagtgatcagttaccaatcctgaaggaacataagaaatgtcaagccaattacaaatcaaataccaaacactcccaaaaatgtt 11798297  T
Q  620 gcagccaatgaaaagatgatccgccgtctctaaatttccacacc 663  Q
    ||| |||||||||||||||| || ||||||| ||||||||||||    
T  11798296 gcaaccaatgaaaagatgatacgtcgtctctgaatttccacacc 11798253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 320 - 663
Target Start/End: Complemental strand, 10349426 - 10349083
Alignment:
Q  320 tcatgaaaactaaaagctagcggaatgcaattcgaagagagccaaagaaaggaattgaacttcactttatcaaggatgctttgggggatctattaccgca 419  Q
    |||||||||| |||||||| |||||||| ||| || || ||||| |  || ||||   |||||||||| ||||| ||| |||| || |||||||||||||    
T  10349426 tcatgaaaaccaaaagctaacggaatgcgattagatgatagccataagaatgaatcccacttcactttttcaagaatgatttgagg-atctattaccgca 10349328  T
Q  420 tttttgaagacacagttgttccgagctttccaaattgcacgaataaaagcgagccaaatcaccttaaaataaaaatgggaagatctcagcatacccgcca 519  Q
    ||||| || | |||||| || ||| | ||||| ||||| | |||| ||||||||||||||||||| ||||||  ||| ||||||||| |||  |||| ||    
T  10349327 ttttttaatatacagttatttcgatccttccagattgcccaaatagaagcgagccaaatcaccttgaaataagtatgagaagatctcggcaagcccgtca 10349228  T
Q  520 aattagtaaactgtaaaaagtaatcggttaccaatcctgaaggaacat-atgagatgccaagccaattacaaaccaaatacctaacactcccaaaaatgt 618  Q
      ||  ||||||||||||||| ||| |  | || |||| ||||  ||| |  | |||||||||||||||||||  ||||||| |||| | |||||||  |    
T  10349227 tgttgctaaactgtaaaaagtgatcagaaatcagtcctaaaggggcataaaaaaatgccaagccaattacaaattaaataccaaacatttccaaaaagat 10349128  T
Q  619 tgcagccaatgaaaagatgatccgccgtctctaaatttccacacc 663  Q
    | || |||| ||||||||||||||||||||| |  ||||||||||    
T  10349127 tacaaccaaggaaaagatgatccgccgtctcaatgtttccacacc 10349083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 20819603 - 20819646
Alignment:
Q  148 aacaaatcaaaatggattatattgctcaaacgaataagtgattca 192  Q
    |||||||||||||||| ||||||||||||| ||| ||||||||||    
T  20819603 aacaaatcaaaatggaatatattgctcaaaagaa-aagtgattca 20819646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 262 - 615
Target Start/End: Complemental strand, 3202664 - 3202312
Alignment:
Q  262 caaaacaaaaagacaaaattacatgccacccatacaaagaaatggatgcctccactagtcatgaaaactaaaagctagcggaatgcaattcgaagagagc 361  Q
    ||||||||||  ||||||||||||| || ||||| |||||| ||| ||||||||| | || |||||||||||||||| |||||||| |||||||||||||    
T  3202664 caaaacaaaattacaaaattacatgacatccatataaagaagtgggtgcctccaccaatcctgaaaactaaaagctatcggaatgcgattcgaagagagc 3202565  T
Q  362 caaagaaaggaattgaacttcactttatcaaggatgctttgggggatctattaccgcatttttgaagacacagttgttccgagctttccaaattgcacga 461  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||  |||| |||||||| | |    
T  3202564 caaagaaaggaattaaacttcactttatcaaggatgctttgggg-atctattaccgcatttttgaagacaaagttgctccgttctttgcaaattgcccaa 3202466  T
Q  462 ataaaagcgagccaaatcaccttaaaataaaaatgggaagatctcagcatacccgccaaattagtaaactgtaaaaagtaatcggttaccaatcctgaag 561  Q
     || ||||||| |||||||| |||||||||| |||| |||||||| |||||||| ||||||||||||| |||||||||| ||| ||||||| |||| |||    
T  3202465 gtagaagcgagtcaaatcactttaaaataaatatggaaagatctcggcatacccaccaaattagtaaagtgtaaaaagtgatcagttaccattcctaaag 3202366  T
Q  562 gaacatatgagatgccaagccaattacaaaccaaatacctaacactcccaaaaa 615  Q
    |||||||||| |||||||||||||||||||  ||||| | ||||||||||||||    
T  3202365 gaacatatgaaatgccaagccaattacaaattaaatatcaaacactcccaaaaa 3202312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 405 - 670
Target Start/End: Original strand, 22858900 - 22859165
Alignment:
Q  405 ggatctattaccgcatttttgaagacacagttgttccgagctttccaaattgcacgaataaaagcgagccaaatcaccttaaaataaaaatgggaagatc 504  Q
    ||||||||||  ||||||||||||| ||| || || ||| | || |||||||| | |||| ||||||| ||||||||||| ||||||  ||| ||||||     
T  22858900 ggatctattagtgcatttttgaagatacatttattacgaccctttcaaattgcccaaatagaagcgagtcaaatcaccttgaaataagtatgagaagatt 22858999  T
Q  505 tcagcatacccgccaaattagtaaactgtaaaaagtaatcggttaccaatcctgaaggaacatatgagatgccaagccaattacaaaccaaatacctaac 604  Q
    || ||||||||||||||||| |||||||||||||||  ||  | | |||||||||||||||||| || ||||||| |||||||||||  || |||| |||    
T  22859000 tcggcatacccgccaaattactaaactgtaaaaagtggtcattaagcaatcctgaaggaacataagaaatgccaaaccaattacaaattaagtaccaaac 22859099  T
Q  605 actcccaaaaatgttgcagccaatgaaaagatgatccgccgtctctaaatttccacacctaccgac 670  Q
    ||||||||||| |||||| | || ||||||||||| || |||||| |  |||||| ||| ||||||    
T  22859100 actcccaaaaaggttgcaactaaggaaaagatgattcgtcgtctcaatgtttccatacccaccgac 22859165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 2220097 - 2220140
Alignment:
Q  148 aacaaatcaaaatggattatattgctcaaacgaataagtgattca 192  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  2220097 aacaaatcaaaatggattatattgctcaaacgaa-aagtgattca 2220140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 278 - 338
Target Start/End: Original strand, 34468294 - 34468354
Alignment:
Q  278 aattacatgccacccatacaaagaaatggatgcctccactagtcatgaaaactaaaagcta 338  Q
    ||||||||| |||| |||||||||| ||| || |||||| |||||||||||||||||||||    
T  34468294 aattacatgacaccaatacaaagaagtgggtgtctccaccagtcatgaaaactaaaagcta 34468354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 4e-49; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 280 - 663
Target Start/End: Original strand, 13159848 - 13160230
Alignment:
Q  280 ttacatgccacccatacaaagaaatggatgcctccactagtcatgaaaactaaaagctagcggaatgcaattcgaagagagccaaagaaaggaattgaac 379  Q
    ||||||| || ||| |||||| |||||||| |||||| | |||||||||  ||| |||| |||||| |  |||||||| ||||| | ||| ||||   ||    
T  13159848 ttacatgacatccaaacaaagtaatggatgtctccaccaatcatgaaaatcaaacgctaacggaatacggttcgaagatagccataaaaatgaatcccac 13159947  T
Q  380 ttcactttatcaaggatgctttgggggatctattaccgcatttttgaagacacagttgttccgagctttccaaattgcacgaataaaagcgagccaaatc 479  Q
    ||||| || ||||| ||  |||| || |||||  |||||||||||||| | | |||| || ||  | ||||||||||| |  ||| ||||||||||||||    
T  13159948 ttcaccttttcaagaataatttgagg-atctaacaccgcatttttgaatatatagttattacggtccttccaaattgcccatatagaagcgagccaaatc 13160046  T
Q  480 accttaaaataaaaatgggaagatctcagcatacccgccaaattagtaaactgtaaaaagtaatcggttaccaatcctgaaggaacatatgagatgccaa 579  Q
    ||||||||||||  ||| ||||||||| |||| |||||||||||| |||||||||||||||  || || | || || |||||||||||| || || ||||    
T  13160047 accttaaaataagtatgagaagatctcggcatgcccgccaaattactaaactgtaaaaagtggtcagtaagcagtcttgaaggaacataagaaataccaa 13160146  T
Q  580 gccaattacaaaccaaatacctaacactcccaaaaatgttgcagccaatgaaaagatgatccgccgtctctaaatttccacacc 663  Q
    ||||| ||||||  || |||| |||||| ||||||| |||||| |||| ||||||||||||||||||||| |  ||||||||||    
T  13160147 gccaactacaaattaagtaccaaacacttccaaaaaggttgcaaccaaggaaaagatgatccgccgtctccatgtttccacacc 13160230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 253 - 334
Target Start/End: Original strand, 16736320 - 16736401
Alignment:
Q  253 ccaccaactcaaaacaaaaagacaaaattacatgccacccatacaaagaaatggatgcctccactagtcatgaaaactaaaa 334  Q
    ||||||||||||||||||| |||| ||||||||| || ||||| |||  || |||| ||||||| | ||||||||| |||||    
T  16736320 ccaccaactcaaaacaaaaggacagaattacatgacatccatataaatgaacggatacctccaccaatcatgaaaattaaaa 16736401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 13159699 - 13159742
Alignment:
Q  148 aacaaatcaaaatggattatattgctcaaacgaataagtgattca 192  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||    
T  13159699 aacaaatcaaaatggaatatattgctcaaacgaa-aagtgattca 13159742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 16736169 - 16736213
Alignment:
Q  148 aacaaatcaaaatggattatattgctcaaacgaataagtgattca 192  Q
    |||||||||||||| ||||||||||||||||||| || |||||||    
T  16736169 aacaaatcaaaatgaattatattgctcaaacgaaaaaatgattca 16736213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 348 - 496
Target Start/End: Original strand, 22322626 - 22322773
Alignment:
Q  348 aattcgaagagagccaaagaaaggaattgaacttcactttatcaaggatgctttgggggatctattaccgcatttttgaagacacagttgttccgagctt 447  Q
    |||||||||||||||| | ||||||||| ||||||||||| ||||  || |    | ||||| || |||||||||||||||||| | ||||| |   | |    
T  22322626 aattcgaagagagccataaaaaggaattcaacttcactttttcaacaatac-cgagaggatcaataaccgcatttttgaagacataattgtttctctcct 22322724  T
Q  448 tccaaattgcacgaataaaagcgagccaaatcaccttaaaataaaaatg 496  Q
    |||||||||| | |||| |||| |||||||| || |||| |||||||||    
T  22322725 tccaaattgcccaaatacaagcaagccaaataactttaagataaaaatg 22322773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 46191195 - 46191238
Alignment:
Q  148 aacaaatcaaaatggattatattgctcaaacgaataagtgattca 192  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||    
T  46191195 aacaaatcaaaatggaatatattgctcaaacgaa-aagtgattca 46191238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 149 - 225
Target Start/End: Original strand, 20177379 - 20177456
Alignment:
Q  149 acaaatcaaaatggattatattgctcaaacgaataagtgattcatc-cgcataagatatgtt-aaagtgataaatcaca 225  Q
    |||||||||||| || |||||||||||| |||| |||||||||| | |||| |||||||||| |||||||| |||||||    
T  20177379 acaaatcaaaatcgaatatattgctcaatcgaa-aagtgattcacctcgcacaagatatgttaaaagtgatgaatcaca 20177456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 181
Target Start/End: Original strand, 135821 - 135854
Alignment:
Q  148 aacaaatcaaaatggattatattgctcaaacgaa 181  Q
    |||||||||||||||| |||||||||||||||||    
T  135821 aacaaatcaaaatggaatatattgctcaaacgaa 135854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 224
Target Start/End: Original strand, 36825778 - 36825855
Alignment:
Q  148 aacaaatcaaaatggattatattgctcaaacgaataagtgattca-tccgcataagatatgttaaagtgataaatcac 224  Q
    |||||||||||||||| ||||||||||  ||||| | ||||||||  ||| ||||| | |||||||||||| ||||||    
T  36825778 aacaaatcaaaatggaatatattgctcgcacgaaaaggtgattcaccccgtataaggtgtgttaaagtgatgaatcac 36825855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 472 - 532
Target Start/End: Complemental strand, 28708895 - 28708835
Alignment:
Q  472 gccaaatcaccttaaaataaaaatgggaagatctcagcatacccgccaaattagtaaactg 532  Q
    ||||||| || |||||||||||||| | ||||||  ||| ||||||||||| |||||||||    
T  28708895 gccaaataacattaaaataaaaatgagtagatcttggcaaacccgccaaatgagtaaactg 28708835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 44546705 - 44546662
Alignment:
Q  148 aacaaatcaaaatggattatattgctcaaacgaataagtgattca 192  Q
    |||||||||||||||| ||||||||||||| ||| ||||||||||    
T  44546705 aacaaatcaaaatggaatatattgctcaaaggaa-aagtgattca 44546662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 277 - 643
Target Start/End: Original strand, 7639030 - 7639397
Alignment:
Q  277 aaattacatgccacccatacaaagaaatggatgcctccactagtcatgaaaactaaaagctagcggaatgcaattcgaagagagccaaagaaaggaattg 376  Q
    |||||||||| || ||| |||||| |||||||| |||||| | |||| ||||| |||||||| |||||| | ||||||||| |||||||  || ||||      
T  7639030 aaattacatgacatccaaacaaagtaatggatgtctccaccaatcataaaaaccaaaagctaacggaatacgattcgaagatagccaaaagaaagaatcc 7639129  T
Q  377 aacttcactttatcaaggatgctttgggggatctattaccgcatttttgaagacacagttgttccgagctttccaaattgcacgaataaaagcgagccaa 476  Q
      ||||||||| ||||| ||| |||| || ||||||||||| ||||||||| | | |||| || ||| | ||||||||||| |  ||| |||||||||||    
T  7639130 cgcttcactttttcaagaatgatttgagg-atctattaccgtatttttgaatatatagttatttcgatccttccaaattgcccatatagaagcgagccaa 7639228  T
Q  477 atcacctt-aaaataaaaatgggaagatctcagcatacccgccaaattagtaaactgtaaaaagtaatcggttaccaatcctgaaggaacatatgagatg 575  Q
    |||||||| |||| ||| ||| ||| ||||| ||||||||||||  ||  ||||||| | ||||| ||| |  | |   | ||||||||||||  | |||    
T  7639229 atcaccttgaaaaaaaatatgagaaaatctcggcatacccgccatgttgctaaactgcagaaagtgatcagaaagctgacgtgaaggaacataacaaatg 7639328  T
Q  576 ccaagccaattacaaaccaaatacctaacactcccaaaaatgttgcagccaa-tgaaaagatgatccgc 643  Q
    ||||||||||||||||  || |||| |||||| ||||||| ||| || ||||   ||||||||||||||    
T  7639329 ccaagccaattacaaattaagtaccaaacacttccaaaaaggttacaaccaagaaaaaagatgatccgc 7639397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 7638885 - 7638928
Alignment:
Q  148 aacaaatcaaaatggattatattgctcaaacgaataagtgattca 192  Q
    |||||||||||||||| |||||| |||||||||| ||||||||||    
T  7638885 aacaaatcaaaatggaatatattactcaaacgaa-aagtgattca 7638928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 472 - 532
Target Start/End: Original strand, 25280737 - 25280797
Alignment:
Q  472 gccaaatcaccttaaaataaaaatgggaagatctcagcatacccgccaaattagtaaactg 532  Q
    ||||||| || |||||||||||||| | ||||||  ||| ||||||||||| |||||||||    
T  25280737 gccaaataacattaaaataaaaatgagtagatcttggcaaacccgccaaatgagtaaactg 25280797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 274 - 531
Target Start/End: Original strand, 36181 - 36437
Alignment:
Q  274 acaaaattacatgccacccatacaaagaaatggatgcctccactagtcatgaaaactaaaagctagcggaatgcaattcgaagagagccaaagaaaggaa 373  Q
    ||||||||||||| ||||||||||||| | ||  || |||||| | |||||||||| |||||| |  |||  |  ||||||||| | ||| | || ||||    
T  36181 acaaaattacatgacacccatacaaaggagtgagtgtctccaccaatcatgaaaaccaaaagcaattggagcgtgattcgaagataaccataaaatggaa 36280  T
Q  374 ttgaacttcactttatcaaggatgctttgggggatctattaccgcatttttgaagacacagttgttccgagctttccaaattgcacgaataaaagcgagc 473  Q
    ||  |||||||||| ||||| || || || || ||| ||||||| |||||| ||||||| |||||| |   | ||||| ||||| | |  | |||  |||    
T  36281 ttctacttcactttttcaagaatactatgagg-atcgattaccgtattttttaagacacggttgtttctttccttccatattgcccaaccagaagaaagc 36379  T
Q  474 caaatcaccttaaaataaaaatgggaagatctcagcatacccgccaaattagtaaact 531  Q
    ||||| ||||||||||| ||||| |||||||   | ||||||||||||||| ||||||    
T  36380 caaataaccttaaaatataaatgtgaagatcgtggtatacccgccaaattaataaact 36437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 276 - 520
Target Start/End: Complemental strand, 23257102 - 23256859
Alignment:
Q  276 aaaattacatgccacccatacaaagaaatggatgcctccactagtcatgaaaactaaaagctagcggaatgcaattcgaagagagccaaagaaaggaatt 375  Q
    ||||||||||| |||||||||| |||| ||| || |||||| | |||||||||  |||||| |  |||||   ||||||||||| ||| | ||| |||||    
T  23257102 aaaattacatgacacccatacacagaagtgggtgtctccaccaatcatgaaaatcaaaagcaattggaataatattcgaagagatccataaaaaagaatt 23257003  T
Q  376 gaacttcactttatcaaggatgctttgggggatctattaccgcatttttgaagacacagttgttccgagctttccaaattgcacgaataaaagcgagcca 475  Q
    |  ||||||||| ||||||||| ||  |   ||| || ||||||||    ||||||| |||||| | | | ||||||||| | | | ||||| | |||||    
T  23257002 gcgcttcactttttcaaggatg-ttgtgaatatcaataaccgcattggaaaagacactgttgtttctatccttccaaatttcccaagtaaaaacaagcca 23256904  T
Q  476 aatcaccttaaaataaaaatgggaagatctcagcatacccgccaa 520  Q
    ||| ||||||||||||| ||| || |||| | |||||||||||||    
T  23256903 aataaccttaaaataaatatgagatgatcgcggcatacccgccaa 23256859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 21825284 - 21825240
Alignment:
Q  148 aacaaatcaaaatggattatattgctcaaacgaataagtgattca 192  Q
    |||||||||||||||| ||||||||||||| ||| | ||||||||    
T  21825284 aacaaatcaaaatggaatatattgctcaaaagaaaaggtgattca 21825240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 23257242 - 23257199
Alignment:
Q  148 aacaaatcaaaatggattatattgctcaaacgaataagtgattca 192  Q
    |||||||||||||||| ||||||| ||||||||| ||||||||||    
T  23257242 aacaaatcaaaatggaatatattgttcaaacgaa-aagtgattca 23257199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 37268410 - 37268367
Alignment:
Q  148 aacaaatcaaaatggattatattgctcaaacgaataagtgattca 192  Q
    |||||||||||||||| ||||||||||||| ||| ||||||||||    
T  37268410 aacaaatcaaaatggaatatattgctcaaaggaa-aagtgattca 37268367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 405 - 484
Target Start/End: Complemental strand, 5195362 - 5195283
Alignment:
Q  405 ggatctattaccgcatttttgaagacacagttgttccgagctttccaaattgcacgaataaaagcgagccaaatcacctt 484  Q
    ||||| || |||||||||||||||| |||||||||||   | ||||||||||| | |||| |||| |||||||| |||||    
T  5195362 ggatcaataaccgcatttttgaagatacagttgttcctctccttccaaattgcccaaatacaagcaagccaaataacctt 5195283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 532
Target Start/End: Original strand, 5675831 - 5675892
Alignment:
Q  471 agccaaatcaccttaaaataaaaatgggaagatctcagcatacccgccaaattagtaaactg 532  Q
    |||||||| ||||||| ||||||||| |||| ||   ||||||||||||||| |||||||||    
T  5675831 agccaaataaccttaagataaaaatgagaagctcgtggcatacccgccaaatgagtaaactg 5675892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 16477626 - 16477670
Alignment:
Q  148 aacaaatcaaaatggattatattgctcaaacgaataagtgattca 192  Q
    |||||||||||||||| ||||||||||||| ||| | ||||||||    
T  16477626 aacaaatcaaaatggaatatattgctcaaaagaaaaggtgattca 16477670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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